RNA id: CI01000012_00689933_00695237.mRNA


Basic Information

Item Value
RNA id CI01000012_00689933_00695237.mRNA
length 1433
RNA type mRNA
GC content 0.39
exon number 3
gene id CI01000012_00689933_00695237
representative True

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 689094 ~ 695264 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGAATATAACCAGACTGAGAGGAAGAGATGAGTGAATCATTAAACATTCAGCAGGAAGACAATGCAGGTAAGCAACAGCACAGTCAGTGTTCAATGGTGATGATAATGATCATTAGCTCATTAGTCTTTTCTGGTTACCAGGTATTATGGCTGAGTCCGGGTGCAGATGGAGATAAGAATGGAGGAAGAGCACAACCCACTGAAGGAGCACGTTCTAGTTCGAAAAATAAGTCCCTCCTTTTTAAAAGCAAAAATATCAAACGGATTCCACGAATAAAAGTCTTTTGTGTCCAAAAACAAGAAAAATTGGAATTCTCCTACCAGTTGATGATTTCTAAGCACAGTTCAAACTGGAAACAGCTTCATGTGGTCGCACCCATTCAGAAATATAATCTTTTTGCTGTATTAAATGTCTTTTCTCTTTATATTAAAGCTTTCTCACGGAGGGTCTCTGAATATCTCTCTAGGCAGCTGCTCCGCCTGACTCGCTCTCTCCCTCTGCTCACGCTGACAGTGCAGCAGCGCCGGCGCAACCTGTGGGCGGGACTTAGCAGCACTTTCATAACATTGGCTCTTAGGAGAGTCAGTCATTGAAAGGAGAACAGTGATTGGACGGAACAGTATTTCTTCTGGAACTTTCCTCCCTTTTTTCCTTTTCTTAGCTTTCTTTAACATAGTTTTTAAATCACACATATAATCCTGAAAATAGTATATGTTTGAAAAAAAAATATATAACTTATATTTGGTGATATTTTAGATGCAAATGTCATGTTGGTTAACACAGACATGTGAAATTGGCTATGTAATGAAAAATGATAAAAAATAGTATGCATTTTATCATATATCATGTTAAAAAGAACACTTGAATTAATAACTTTAAGCTTTGGAAACAGACTTTGGGTCATTTTTTGTCATCTGATCAAATGTTGCGGACCCAAATGGCACCCGTTTCGTAGAATGACTCTTTTAATCTTTTAACTGGTAACCTGATTACCTGGGTTACACATGCTTTGAAGAACAGAAGAATAATAACCATTTCTTTGGTGCACATTTAAACATTGCACAATCAGTGGACATCTTTGAGAGTATATGTGGGCCTGATGTGAACACACACTTTGAAATGAAAGAGTCAAGAGAAACTAGAGAAACAGTCTTGTACCCCACAGAATCAGAAAAAGGCAGTGAGCTTCCCTCTCTTCCTGAGTACCACAGGGATAAGAGAGATTAAAGAAAGACAAATGAACAAGTTGATGAGAGATACAACCAGTGTGTGCTTGGGGTCCATTGTGTTGATAAGCACCTTAGGGAATTACACAGAAGACTGAAGTATCTCAGCACTTCATTTGTCTTGCTGTGATACAGGGTTCAAGTGATGAGCTCAGCAGGACTGGCATTGTTTAGCTGGGCTGGATTTCTAGGTGACAAACAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU78960 lncRNA downstream 2932 685576 ~ 686162 (-) True G69237
TU78952 lncRNA downstream 10619 677919 ~ 678475 (-) False G69234
TU78953 lncRNA downstream 10619 678256 ~ 678475 (-) True G69234
TU78955 lncRNA downstream 11380 677008 ~ 677714 (-) True G69235
TU78890 lncRNA downstream 20856 667996 ~ 668238 (-) True G69180
TU78988 lncRNA upstream 21729 716993 ~ 717311 (-) True G69262
TU78989 lncRNA upstream 22666 717930 ~ 718195 (-) True G69263
TU78990 lncRNA upstream 23227 718491 ~ 718767 (-) True G69264
TU78991 lncRNA upstream 23630 718894 ~ 719184 (-) True G69265
TU79021 lncRNA upstream 55434 750698 ~ 750997 (-) True G69291
CI01000012_00686760_00686993.mRNA mRNA downstream 2101 686521 ~ 686993 (-) True CI01000012_00686760_00686993
CI01000012_00647774_00648451.mRNA mRNA downstream 40149 647586 ~ 648945 (-) True CI01000012_00647774_00648451
CI01000012_00520655_00552630.mRNA mRNA downstream 135274 520139 ~ 553820 (-) True CI01000012_00520655_00552630
CI01000012_00427641_00472235.mRNA mRNA downstream 216517 427573 ~ 472577 (-) True CI01000012_00427641_00472235
CI01000012_00382850_00384215.mRNA mRNA downstream 304668 381711 ~ 384426 (-) True CI01000012_00382850_00384215
CI01000012_00863269_00864644.mRNA mRNA upstream 166776 862040 ~ 865072 (-) True CI01000012_00863269_00864644
CI01000012_00866804_00867133.mRNA mRNA upstream 170721 865985 ~ 867133 (-) True CI01000012_00866804_00867133
CI01000012_00904582_00908136.mRNA mRNA upstream 209187 904451 ~ 909518 (-) True CI01000012_00904582_00908136
CI01000012_00955355_00975846.mRNA mRNA upstream 260091 955355 ~ 975880 (-) True CI01000012_00955355_00975846
CI01000012_01032204_01034843.mRNA mRNA upstream 336705 1031969 ~ 1034843 (-) True CI01000012_01032204_01034843
TU78867 other downstream 101079 587604 ~ 588015 (-) True G69161
TU78856 other downstream 122138 565463 ~ 566956 (-) True G69150
TU78086 other downstream 509132 179563 ~ 179962 (-) True CI01000012_00178282_00181473
TU79003 other upstream 34656 729920 ~ 730465 (-) True G69277
TU79074 other upstream 80100 775364 ~ 775746 (-) False G69332
TU79075 other upstream 80100 775364 ~ 775879 (-) False G69332
TU79072 other upstream 80146 775410 ~ 775879 (-) True G69332
TU79046 other upstream 440412 1135676 ~ 1151198 (-) True CI01000012_01139864_01192154

Expression Profile