RNA id: CI01000012_04052923_04100797.mRNA



Basic Information


Item Value
RNA id CI01000012_04052923_04100797.mRNA
length 924
RNA type mRNA
GC content 0.44
exon number 6
gene id CI01000012_04052923_04100797
representative False

Chromosome Information


Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 4052613 ~ 4101000 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


TTATAAAAAGCTATTGATGTCTGGAGATAATGCAATATCATAATAAGGTGGATCTTTCTTTTCTCAGCCCAGCAGATGCACTCATGCTATTAACATACATCGATGATTTAGTACACAGGTAACTGAATTTTCTCTTTAATTAACAAATCAATACGGTGACTGCTTTCTGCTGTAGTAGTGAAAGGTCATTGGTGTGTCTTTGTATGCTCAATAATTGAATTTACATGGATTAAAGCAGTTTAGAAGAAGTTTAGCATTCATCTGTGGCCAGACCTGTTAAATAAACCCATCGCAGGTGATCTGTGACACAATGGCCATGGTGATTCATGGCCAAACTATCCCATTGGTCCATCAGCCTGTCACTCTGATGACGTCCCCGGTTCACGCTGCCAATCATCTTTCAACGCCCCGTGTACAGTTGCGTTTTGCTGTCAGTCTTTCCAGTCGTCACGTTGTGTGTGAGGCTGGGAAGGTGCGGGCAGCCACAGATGGCCTGGATGCCAGAGAAAAATACAAAGCCAAGGTTGATTCATGTGGTAGCTTCTCAGAGACACGTCTGGTCCCCGTCCAATTACTATTCCAAAATACGTCAGGGGACTGGCCTGCCACAAGTGACTACCACACTGACTCAGAGACACCTGTGTCTTCTGGGCAACTGTGGCAGGAAAAGAGCAACCTACACCTGCAGCCTGGGCTCAGCGAGCATCACCCTCAGGGCTGAGCAGCAAATCCAGCACATGCATGATGATTTATTCATTGCAGATCTGATGAACTTTTGCAACTGCAAACTGCACTGGAAGAACAATAGCTGTACAAACGTTGCAAAACAGGGAAAACAGTCCAAATGTCAAGCTGAGATGTTCATAACTACCCTGACATCTTCCAATAGATTAGACAAACAAATGGTTATATTTTGATTATATA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU81102 lncRNA upstream 8378 4042982 ~ 4044235 (+) True G71134
TU81091 lncRNA upstream 32307 4019905 ~ 4020306 (+) True G71124
TU81004 lncRNA upstream 87045 3825833 ~ 3965568 (+) True G71038
TU81007 lncRNA upstream 178025 3829728 ~ 3874588 (+) False G71041
TU81008 lncRNA upstream 178025 3829728 ~ 3874588 (+) True G71041
TU81125 lncRNA downstream 5835 4106835 ~ 4107122 (+) True G71156
TU81127 lncRNA downstream 8941 4109941 ~ 4110276 (+) True G71158
TU81287 lncRNA downstream 138125 4239125 ~ 4239406 (+) True G71305
TU81357 lncRNA downstream 245804 4346804 ~ 4347380 (+) True G71375
TU81218 lncRNA downstream 380638 4481638 ~ 4505484 (+) True G71238
CI01000012_03989870_04006406.mRNA mRNA upstream 46018 3989711 ~ 4006595 (+) True CI01000012_03989870_04006406
CI01000012_03736684_03742335.mRNA mRNA upstream 309547 3736636 ~ 3743066 (+) True CI01000012_03736684_03742335
CI01000012_03633636_03709136.mRNA mRNA upstream 343477 3633636 ~ 3709136 (+) True CI01000012_03633636_03709136
CI01000012_03414617_03418724.mRNA mRNA upstream 633205 3414617 ~ 3419408 (+) True CI01000012_03414617_03418724
CI01000012_03394096_03396897.mRNA mRNA upstream 655716 3393889 ~ 3396897 (+) True CI01000012_03394096_03396897
CI01000012_04179776_04184166.mRNA mRNA downstream 78776 4179776 ~ 4184450 (+) True CI01000012_04179776_04184166
CI01000012_04209791_04237026.mRNA mRNA downstream 108026 4209026 ~ 4237160 (+) True CI01000012_04209791_04237026
CI01000012_04266133_04266370.mRNA mRNA downstream 165133 4266133 ~ 4267426 (+) True CI01000012_04266133_04266370
CI01000012_04285964_04292319.mRNA mRNA downstream 184594 4285594 ~ 4293775 (+) True CI01000012_04285964_04292319
CI01000012_04371425_04373907.mRNA mRNA downstream 270425 4371425 ~ 4373991 (+) True CI01000012_04371425_04373907
TU79850 other upstream 1421228 2622478 ~ 2631385 (+) True G70029
TU78809 other upstream 2354377 1697400 ~ 1698236 (+) True CI01000012_01698932_01719811
TU78309 other upstream 3367757 683523 ~ 684856 (+) False G68725
TU78310 other upstream 3367825 683523 ~ 684788 (+) True G68725
TU78307 other upstream 3367917 683523 ~ 684696 (+) False G68725
TU81174 other downstream 319239 4420239 ~ 4420494 (+) True G71194
TU81162 other downstream 397453 4498453 ~ 4500089 (+) True CI01000012_04495631_04501066
TU81129 other downstream 1075895 5176895 ~ 5180970 (+) False CI01000012_05177587_05180517
TU81130 other downstream 1075895 5176895 ~ 5180970 (+) False CI01000012_05177587_05180517
TU81131 other downstream 1075895 5178778 ~ 5179220 (+) True G71159

Expression Profile