RNA id: CI01000012_05523886_05527548.mRNA



Basic Information


Item Value
RNA id CI01000012_05523886_05527548.mRNA
length 1513
RNA type mRNA
GC content 0.44
exon number 4
gene id CI01000012_05523886_05527548
representative True

Chromosome Information


Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 5523886 ~ 5528161 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


ATGAACCTGAAAGTGTTCTGCCTGTCTCTCCTTCTGTTTGAAGCCTCCTGTTTCACTGAGTTTGAGATTACTGTGCCCAGAGGTCCTGTCACTGGGTTTTACGGAGAGGTGCTGATCCTCCCCTGCACCTTCCCTGTGGACTCGTTGGATCTGAGTAACACCCTGATCTCCTGGCAGCGTGGGCTGGATGTGGTTCACAGCTACCACTACAGTCGGGACCAGCTCAACCGTCAGAATCCTCATTATGTGAACCGCACCAGCCTGTTCATCCAGGAGATGGCAGGAGGAAACGCATCACTCAAACTGGAGAGAGTCACTCTGCAGGACTCTGGTGTGTACACCTGCTCCATCAGCACAAACACCGGCAGCCAGAAGAAGAGCTTTAGAGTGAATATTGCAGCGTTCTACTCTGAACCTCGTCTGCAGTTCTCCATGTTAACTGATGGAGTCAACCTGCTAGTGACATCAGATGGGGGCTACCCTTCTCCTGAACTGCAGTGGCTGATGGAAAACTCAGACATCACTAACCAGGCACAAACACACATCATGCAGGACACACAAACTGGACTTTACATTGTGTCTAGTTGGATAAAAGTCACTGAAGTCACAAACTCCTCTCTGACATTCATACTGAACAACAAACCTCTGGGTCAAGACATCAGAAGAGAGATCCAGCTGTACTCAGATAAGAGTGAGAGACAAGGAGCATGTAGATGCCACGGATGCTTCTTATTGATCCCTGTTATTCTGCTGCTGCTGCTGATCGTGATGGGTTTATTGTTTGTGTTCATTATAAGCAGAAGAAGAGAACAGACCAAACTAAATTACTTTACTAATATGGGACTCAACTCTGAAACCCAATTTCTGAATGGAAAATTTCAGCAGTGTATAGGAGCATAACATCATAATGTGGTTTGACAGAGACATGGACTGTAACGAGAGATCACTGTTGGATATCTTCACACTTTAATATGTTTAATGTTCTTATTTTCATCAAACACACCAGCTTAACATCTGTAACACGGCTTGGATTTCGACACGGGATTGCTCCGAATTTGATCAGTAATTCTTTCTGTGAGACGTAATTTTTACAAATAGTGACAAGTGATTCTCTCTCTTTCAAAATGCGCAAATGGCTTCACATAATCACATCGCATTTTTATAAGCGAGCAGCATGCTGCGATACAGGACTTTTGCTCATGTTTCGGGACAGAACTGTCACTTGCCTGTTCATGCCAGAGTTGCATCGTCAGTAAAGTTGCACGACTTCCCATTTGAATTTGATTAACTGAATGAACAATTTGACATAAAAGACTACACAGATACATTTAATAAGGTGGTTCTAAAAATTCCCCTGAAAATCAATCCCAGGGTGCAAATGTGGCCCATGGATGGAAAGAAAAGTAGGCTACATCTGAGCCTCGTGTTCCTCAGGCAACATGGCATTTAACATTTAAATGGTTGCTCAGAATTCCTCTGGGTTGAGTGGCCCAGAAGATATATTATCTAAAAA

Function


GO:

id name namespace
GO:0003674 molecular_function molecular_function

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU81205 lncRNA upstream 112370 5409222 ~ 5411516 (+) True G71225
TU81151 lncRNA upstream 218313 5304404 ~ 5305573 (+) True G71171
TU81524 lncRNA upstream 361453 5161509 ~ 5162433 (+) True G71529
TU81152 lncRNA upstream 383918 5137470 ~ 5139968 (+) True G71172
TU81518 lncRNA upstream 489619 5034028 ~ 5034267 (+) True G71523
TU81549 lncRNA downstream 22332 5550493 ~ 5561433 (+) True G71548
TU81561 lncRNA downstream 44656 5572817 ~ 5573228 (+) True G71559
TU81566 lncRNA downstream 80689 5608850 ~ 5611605 (+) True G71562
TU81610 lncRNA downstream 109207 5637368 ~ 5637671 (+) True G71599
TU81617 lncRNA downstream 143593 5671754 ~ 5672210 (+) True G71606
CI01000012_05495596_05510317.mRNA mRNA upstream 12914 5495357 ~ 5510972 (+) True CI01000012_05495596_05510317
CI01000012_05425849_05469157.mRNA mRNA upstream 54729 5425849 ~ 5469157 (+) True CI01000012_05425849_05469157
CI01000012_05419501_05424708.mRNA mRNA upstream 99060 5419501 ~ 5424826 (+) True CI01000012_05419501_05424708
CI01000012_05390382_05407802.mRNA mRNA upstream 115742 5390014 ~ 5408144 (+) True CI01000012_05390382_05407802
CI01000012_05344320_05385222.mRNA mRNA upstream 138329 5344320 ~ 5385557 (+) True CI01000012_05344320_05385222
CI01000012_05551775_05553851.mRNA mRNA downstream 23522 5551683 ~ 5554363 (+) True CI01000012_05551775_05553851
CI01000012_05565127_05567009.mRNA mRNA downstream 36778 5564939 ~ 5567230 (+) True CI01000012_05565127_05567009
CI01000012_05648602_05650699.mRNA mRNA downstream 120441 5648602 ~ 5651197 (+) True CI01000012_05648602_05650699
CI01000012_05659039_05669397.mRNA mRNA downstream 130878 5659039 ~ 5669584 (+) True CI01000012_05659039_05669397
CI01000012_05708007_05735678.mRNA mRNA downstream 179846 5708007 ~ 5735985 (+) True CI01000012_05708007_05735678
TU81179 other upstream 107101 5413250 ~ 5416785 (+) True G71199
TU81129 other upstream 342916 5176895 ~ 5180970 (+) False CI01000012_05177587_05180517
TU81198 other downstream 7691 5535852 ~ 5538384 (+) True G71218
TU81201 other downstream 10364 5538525 ~ 5540456 (+) True G71221
TU81545 other downstream 22332 5550493 ~ 5561433 (+) False G71548
TU81634 other downstream 285356 5813517 ~ 5816605 (+) False G71623
TU81687 other downstream 395005 5923166 ~ 5924305 (+) True CI01000012_05923216_05928055

Expression Profile