RNA id: TU82580


Basic Information

Item Value
RNA id TU82580
length 456
lncRNA type sense_over
GC content 0.45
exon number 1
gene id CI01000012_05672517_05674075
representative True

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 5672229 ~ 5675834 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AAGTTGAAAACGCTCGCTCTTCTCCTATTGCTCCGCGCCAGATTTTTGACCCGAGGTTCTACCAGACCAATCACAGCGCTTGCGGTCCGCGTAGAATTGACGCGTTGTTACATTTTTGAAGAGGTGCACGTCAGGCTACGTCGTAGGCTACGCGTGGTACAAACAGTCTACGCCGTACACTCGACGCAGAAGTATAAATCAGCCTTAACGCGAAAACAGACTTCATTTGCATCCATGGAAAGCATATTTACACTGTCTGAATCATTACCTATCCTCTAATTAGTGCGCTATGTGCCATTCACCATATAGAAACTAATAAATGTGTGAACAAATGGCCGATTTCAGCCGCAGCTTCAGTGTATGTTGATAGTGTAGGAGGGGGGACTTCAGATTCTAGAGAGATGAGAAGTTGTGATGTCATGAAAATCCATGATCCATTTTAGCTGAAGTGAGAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU82579 lncRNA downstream 2209 5671612 ~ 5671971 (-) True G72390
TU82567 lncRNA downstream 25053 5647648 ~ 5649127 (-) True G72379
TU82557 lncRNA downstream 34825 5639054 ~ 5639355 (-) True G72375
TU82553 lncRNA downstream 36435 5637375 ~ 5637745 (-) False G72374
TU82556 lncRNA downstream 36493 5637154 ~ 5637687 (-) False G72374
TU82546 lncRNA upstream 21362 5695997 ~ 5710173 (-) True G72367
TU82547 lncRNA upstream 36937 5711572 ~ 5719020 (-) True G72368
TU82591 lncRNA upstream 72410 5747045 ~ 5747274 (-) True G72402
TU82592 lncRNA upstream 72857 5747492 ~ 5747711 (-) True G72403
TU82597 lncRNA upstream 237673 5912308 ~ 5914599 (-) True G72408
CI01000012_05609848_05631772.mRNA mRNA downstream 42248 5608833 ~ 5631932 (-) True CI01000012_05609848_05631772
CI01000012_05568600_05606181.mRNA mRNA downstream 67999 5568600 ~ 5606181 (-) True CI01000012_05568600_05606181
CI01000012_05414096_05416676.mRNA mRNA downstream 257504 5413369 ~ 5416676 (-) False CI01000012_05414096_05416676
CI01000012_05131253_05139664.mRNA mRNA downstream 534505 5131030 ~ 5139675 (-) True CI01000012_05131253_05139664
CI01000012_05118797_05123143.mRNA mRNA downstream 551037 5118332 ~ 5123143 (-) True CI01000012_05118797_05123143
CI01000012_05680930_05690904.mRNA mRNA upstream 5402 5680037 ~ 5690904 (-) True CI01000012_05680930_05690904
CI01000012_05738968_05745791.mRNA mRNA upstream 64208 5738843 ~ 5745791 (-) True CI01000012_05738968_05745791
CI01000012_05757115_05758767.mRNA mRNA upstream 82364 5756999 ~ 5758977 (-) True CI01000012_05757115_05758767
CI01000012_05761654_05801725.mRNA mRNA upstream 86706 5761341 ~ 5801725 (-) True CI01000012_05761654_05801725
CI01000012_05810254_05833540.mRNA mRNA upstream 135415 5810050 ~ 5833750 (-) True CI01000012_05810254_05833540
TU82465 other downstream 208323 5462840 ~ 5465857 (-) True G72294
TU82391 other downstream 257400 5363642 ~ 5364083 (-) False G72235
TU82393 other downstream 257400 5363642 ~ 5364079 (-) True G72235
TU82349 other downstream 371974 5293773 ~ 5302206 (-) True G72204
TU82191 other downstream 894048 4776220 ~ 4780132 (-) True G72068
TU82841 other upstream 472376 6147011 ~ 6147494 (-) True G72629
TU84502 other upstream 1680617 7355252 ~ 7355377 (-) True G74087
TU85146 other upstream 2589694 8264329 ~ 8265654 (-) True G74648
TU85219 other upstream 2692384 8367019 ~ 8367627 (-) False G74701
TU85218 other upstream 2692446 8367081 ~ 8367627 (-) False G74701

Expression Profile