RNA id: CI01000012_06713565_06749032.mRNA



Basic Information


Item Value
RNA id CI01000012_06713565_06749032.mRNA
length 1032
RNA type mRNA
GC content 0.46
exon number 7
gene id CI01000012_06713565_06749032
representative True

Chromosome Information


Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 6713456 ~ 6749070 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


ACTTGACCACTAAAAAAGCCAGTGTAACTGCTCCCAAGATGCACTGTGATTATGGAAACCCCATTAGAGGTGGTCAGGGACCAGCAATTTTGAAGACATTATCCAAGTGTAATTTTGCAGCCAGAGAAGACAATGAGGTAGTCTCCGACATATTCTTTGTCAAAAAATGGGGTCATGTTTCTTTAGGTGGATTCTTGATTTGCTCAGGCAGTTACCTTAATCTTCTCCTTTGTCCTCCTGATTACGGCTACAGTCCATACAGGCGACTAATTTTATTAAGGACTGGGAAAAGTTCTTTTTCATCTATGCAGATTAGCTTTTTGGCAGTCGTGTCCCGCAATTACTCAACGTTTACATCAACGTGTTTCACCCTGCCACTAATTAACAGGTGGCTTGGGAAAACATTTGGATCTGGGCTTTTAGGGTTAAATTCACACATCAAAGGATCCAATAGGCGAACGTTAAATCGATCTCAGACGATGTTTTCAGAGAGCCCGGATGGCTCGCATTATCATTATGTGATCCATACTGTCGGCCCAATCGCCAGAGGAAATGTGGGCCAGTCCCAAAAAGATGACCTTGAATCATGCTACAAAAACTCCCTCCAGCTGATGAAGGACAATAATTTGAGATCTGTGACAACCTCAGGCTTTAATGAAGCTGGCCAAAGACCAGCAGCTTTGGACCAGGAAGACATAGAGTCTGATCATGCACTGTTCCAGCTGCTGACCCTATCTCCACCATCTGGTGCGCATGAGTTATGGCTCTGTTTTAATCCATGGTGGCCACAACCAGAGGGGCCGTGCGCAAGGCAGACCAATCAGCTCCTCCATCCAGACCAGCAGAGGCCCCTGAGAGGATCTCTCACAATTAGCCATGATGAGACAGTCTTTGTGGGACAAATCGCTAACTTCGGCACTTGATGAACCGCTTTAATCACACTGTGAGGATGGAGAGGTCTGCAGTCATCATCATTTCAAGGGTGGAATTGTGTAGTTAAGGTCGCACGAATTCACTTTTGGCTGCAAGAAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU84636 lncRNA downstream 176819 6534877 ~ 6536637 (-) True G74215
TU84480 lncRNA downstream 385328 6327892 ~ 6328128 (-) True G74066
TU84477 lncRNA downstream 388886 6324358 ~ 6324570 (-) True G74063
TU82923 lncRNA downstream 409393 6303741 ~ 6304063 (-) True G72707
TU82915 lncRNA downstream 415949 6297200 ~ 6297507 (-) True G72699
TU84557 lncRNA upstream 20763 6769833 ~ 6858642 (-) True G74142
TU84664 lncRNA upstream 161954 6911024 ~ 6911324 (-) True CI01000012_06872835_06911259
TU84676 lncRNA upstream 265795 7014865 ~ 7020574 (-) True G74252
TU84570 lncRNA upstream 271660 7088071 ~ 7088082 (-) True G74155
TU84532 lncRNA upstream 289426 7038496 ~ 7053630 (-) True G74117
CI01000012_06694889_06695185.mRNA mRNA downstream 18233 6694787 ~ 6695223 (-) True CI01000012_06694889_06695185
CI01000012_06597401_06599198.mRNA mRNA downstream 112756 6597288 ~ 6600700 (-) True CI01000012_06597401_06599198
CI01000012_06496870_06580459.mRNA mRNA downstream 132537 6496143 ~ 6580919 (-) True CI01000012_06496870_06580459
CI01000012_06406744_06433128.mRNA mRNA downstream 280328 6406744 ~ 6433128 (-) True CI01000012_06406744_06433128
CI01000012_06147833_06153076.mRNA mRNA downstream 559253 6147695 ~ 6154203 (-) True CI01000012_06147833_06153076
CI01000012_06872835_06911259.mRNA mRNA upstream 123645 6872715 ~ 6911968 (-) False CI01000012_06872835_06911259
CI01000012_06979304_06984075.mRNA mRNA upstream 230226 6979296 ~ 6984944 (-) True CI01000012_06979304_06984075
CI01000012_06989295_06990487.mRNA mRNA upstream 239862 6988932 ~ 6990843 (-) True CI01000012_06989295_06990487
CI01000012_07032479_07034631.mRNA mRNA upstream 283383 7032453 ~ 7035201 (-) False CI01000012_07032479_07034631
CI01000012_07092852_07097731.mRNA mRNA upstream 343782 7092852 ~ 7097731 (-) True CI01000012_07092852_07097731
TU82841 other downstream 565962 6147011 ~ 6147494 (-) True G72629
TU82465 other downstream 1247599 5462840 ~ 5465857 (-) True G72294
TU82391 other downstream 1296676 5363642 ~ 5364083 (-) False G72235
TU82393 other downstream 1296676 5363642 ~ 5364079 (-) True G72235
TU82349 other downstream 1411250 5293773 ~ 5302206 (-) True G72204
TU84502 other upstream 606182 7355252 ~ 7355377 (-) True G74087
TU85146 other upstream 1515259 8264329 ~ 8265654 (-) True G74648
TU85219 other upstream 1617949 8367019 ~ 8367627 (-) False G74701
TU85218 other upstream 1618011 8367081 ~ 8367627 (-) False G74701
TU85225 other upstream 1618011 8367081 ~ 8367643 (-) True G74701

Expression Profile