RNA id: CI01000012_06979304_06984075.mRNA



Basic Information


Item Value
RNA id CI01000012_06979304_06984075.mRNA
length 1528
RNA type mRNA
GC content 0.39
exon number 5
gene id CI01000012_06979304_06984075
representative True

Chromosome Information


Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 6979296 ~ 6984944 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


ATAAACCAGCTGTACAGACTGTGTTGTATGTGTCATCTTCGAAGAGCTTTTGAAGACCTTTGTACAGTCGGGTCTGTTCCTGACCTGAGCAGACCCTTTTGGAGAAGCGGTTATTGTCTTGTGCTTAAACTCTTTGCAAGCAGATATGGTTCTTCTACCCTTATTGTTAAGGGTATAGTTCACCCAAAAATTCATTTGCTAACCCTCATGTCGTAGTAAACTTTTTTTTTTTTTTTTTTTTTTTTTTTAGGTCAATCTTTTTCATATAATGGAAGTGAATGAGGATTGGGGTTGTCAAGCTACAAAATAACAAAAAAAGCAACATAAATAAGGTGGTACGTACTCCACGCCATGGTGCATTTCTGTCATTATAATGAAAATAGTGGCCAGTAAATTCTTTAAAAAAAAAATCTGTTCCACAGAAAAAGGTTTTGAATGACATTACAGTGAGTGATGATAAATGATGATAATTTTTAGATGTACTAACCCCTTCATGTATGGCTTTTTTTAATTTGAAAACTGAGCATATACTTCTACTCTTCTGACCTTTTTGAGTGCTCAGATTATTAGTTTATAGTTTGATGATCTTTTACATATTTGTGTTTCCCGTAAAGGAGCTGATATACCTCACAGAGTTTGGGTCTGTCAGTGATTAAATTCTAGTGGCCTTCAGTAGAATAGATATGGTTGACCTGCTTTCACTACTGTGTGGCTTGACTGTTGACTAGACTGCCAAAGTTTAGGACAGACATGAAGGTTAGACGTTGTCCCTTTTCCAAAAACCTCCCTGATTGTTTGCTAAAATTCTATAAATTCTATAGAAAATTCTAGCTTTACAAGTATCCATTGGAAGATTAAGTATCTGAATAATGTCCTATCCACCCTGTGCTTTTACAGCGGGTCTAAGTGTCGTGTTTTTAGGGTCAGAGGTGGAGAAGCAGGGCACAGTCGTAGAGACCTCCGCAATATGGCAGAATGTGAATTGCAGGATGGGGTCCAGCTTCATGTACAAGTGTTCATGCTCATGGCAGCATGATAGAGTGGAGATGAATTATTTCCTGCCCTTTCCTGTACTGTATGACCAGTCCAACAGCCCCATTTTGAGATGGGATGTTGCCTTACATGACAAAGAGGAAGCAATGCTTAATGACATTAAAGGTTTGCTGACACAAACAGTTGAACAAATTGTAGATAAGCTTGATAAAGCAGTATTCTTAGTCATTACAGACCTGTCTACTCCCGCTGATTTGGCTAGATTTCAGGAAGTTTCATTTGGCAGTGTGCACAAAGAGAGTTACATAATGATTAAAGCTGTTGATGTAGAGGTGTTTTTCTTAACACCTCAGAAGCATCTGTGTGCCCCAGCGTTCTCGAGCGCTTGTGTGAGTGATGTATCAAATGTACCCCATGTCTTTGTGAAGAACGGCTCAAGAGCGGATAGGAATGGAATGATGACAGCGACCGTTGTTCCCAAAGTGAACTGGCAATTTGTCGCTGCCGTTTGGGATGATGAAAGCTGAGGATTAAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU84664 lncRNA downstream 67972 6911024 ~ 6911324 (-) True CI01000012_06872835_06911259
TU84557 lncRNA downstream 120654 6769833 ~ 6858642 (-) True G74142
TU84636 lncRNA downstream 442659 6534877 ~ 6536637 (-) True G74215
TU84480 lncRNA downstream 651168 6327892 ~ 6328128 (-) True G74066
TU84477 lncRNA downstream 654726 6324358 ~ 6324570 (-) True G74063
TU84676 lncRNA upstream 29921 7014865 ~ 7020574 (-) True G74252
TU84570 lncRNA upstream 35786 7088071 ~ 7088082 (-) True G74155
TU84532 lncRNA upstream 53552 7038496 ~ 7053630 (-) True G74117
TU84679 lncRNA upstream 116481 7101425 ~ 7101860 (-) True G74255
TU84680 lncRNA upstream 117246 7102190 ~ 7102463 (-) True G74256
CI01000012_06872835_06911259.mRNA mRNA downstream 67328 6872715 ~ 6911968 (-) False CI01000012_06872835_06911259
CI01000012_06713565_06749032.mRNA mRNA downstream 230226 6713456 ~ 6749070 (-) True CI01000012_06713565_06749032
CI01000012_06694889_06695185.mRNA mRNA downstream 284073 6694787 ~ 6695223 (-) True CI01000012_06694889_06695185
CI01000012_06597401_06599198.mRNA mRNA downstream 378596 6597288 ~ 6600700 (-) True CI01000012_06597401_06599198
CI01000012_06496870_06580459.mRNA mRNA downstream 398377 6496143 ~ 6580919 (-) True CI01000012_06496870_06580459
CI01000012_06989295_06990487.mRNA mRNA upstream 3988 6988932 ~ 6990843 (-) True CI01000012_06989295_06990487
CI01000012_07032479_07034631.mRNA mRNA upstream 47509 7032453 ~ 7035201 (-) False CI01000012_07032479_07034631
CI01000012_07092852_07097731.mRNA mRNA upstream 107908 7092852 ~ 7097731 (-) True CI01000012_07092852_07097731
CI01000012_07113504_07118919.mRNA mRNA upstream 128412 7113356 ~ 7119168 (-) True CI01000012_07113504_07118919
CI01000012_07164949_07166936.mRNA mRNA upstream 179895 7164839 ~ 7166936 (-) True CI01000012_07164949_07166936
TU82841 other downstream 831802 6147011 ~ 6147494 (-) True G72629
TU82465 other downstream 1513439 5462840 ~ 5465857 (-) True G72294
TU82391 other downstream 1562516 5363642 ~ 5364083 (-) False G72235
TU82393 other downstream 1562516 5363642 ~ 5364079 (-) True G72235
TU82349 other downstream 1677090 5293773 ~ 5302206 (-) True G72204
TU84502 other upstream 370308 7355252 ~ 7355377 (-) True G74087
TU85146 other upstream 1279385 8264329 ~ 8265654 (-) True G74648
TU85219 other upstream 1382075 8367019 ~ 8367627 (-) False G74701
TU85218 other upstream 1382137 8367081 ~ 8367627 (-) False G74701
TU85225 other upstream 1382137 8367081 ~ 8367643 (-) True G74701

Expression Profile