RNA id: CI01000012_07348648_07352865.mRNA



Basic Information


Item Value
RNA id CI01000012_07348648_07352865.mRNA
length 1130
RNA type mRNA
GC content 0.42
exon number 4
gene id CI01000012_07348648_07352865
representative True

Chromosome Information


Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 7348648 ~ 7353209 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


ATGCTTTGGCTCTTTTTGTGTTTCGTGGATGTTCTTGTGGCCTCATTTGAAGTGATTGTCACTGATAAGCATCTGCTGGCAATCCGGGGTCATCCAGCTGTTCTGTGCTGTGAGTTCACACCTGATCCTGACCTCTCCAGCCTGGTGATTACCTGGCAACGATCGGAAGATTCACAGGTTGTCCACAGTTTCTATTATCAGCAGGACCAATTGGACAGACAGAGTCCAGAATTCCACAATCGAACGTCATTATTTATTACAGAGCTTGGTAAAGGAAATGCCTCATTAAGAATTGCAACAGTTAGACCGAAGGATGCAGGCTTCTACTTGTGCATAGTGAGCAATGCAAAGGGAACAGGAAGAGCCTTGATGAAAGTGACCTATGGAGCGCTTTACTCTGAGCCCAGGTTAAGCATCCATGTAAACTCTTCTGCATTGACAGTGCAGTTTGAGACAGAGGGATTCCCCAAACCTGAGGTGATCTGGCTGGGGGAACATGGCCAGAACCTCAGCTATCACCTGGAGCTCCACGACCAGACAGAAGATGGGCTTTATTTCATAAAGAGCAGCTATGAGGCCCAGAAGCCAGCAGTTAATGTCACATTTACATTAAAGAACCACCTCCTGAACCAGAACCTTCAGAGACCCGTGTGCCTCAGCTATGATAAGGACATAACTGCAAATCAAGGAACCATCGCACTTGTCCTGTCCGTGGTTTGTGTTTTTCTGGTCATTGTTATCATTTGGTTAGTGCGGAAGCGAAATAAGTTGAGATCAAACAGTTGATGATTGCTGTAGGAGCTTTGCATACATGTTTCAACATGTTGCATTGTTGAGCTCATTTATTACATCACTGACCACAAGCAGAGCAAAAATCTATTCAGTGTACATACAAGCATTCTTGTGTGAAATTCTTCAGGTTAACATCAATTTACGCTAGAATGCTTGAATGAACAGTATTTATAGTACAGTATACACATGCCAAAAAAAAAGACTGTAAGAGGGAGTCAGATGGGTGTGTCTAAAGTCATTTCTTTGTTAACCGCTTATTTATTTTTCTGTTGTGTATTTTTAAAAACTTTTTGTACAAAATTTAACAAGGGGGAATTTATTCACACTTTAAATTTCAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU83519 lncRNA upstream 746 7347650 ~ 7347902 (+) True G73255
TU83440 lncRNA upstream 2867 7345506 ~ 7345781 (+) True G73181
TU83518 lncRNA upstream 3733 7344595 ~ 7344915 (+) True G73254
TU83517 lncRNA upstream 9673 7338770 ~ 7338975 (+) True G73253
TU83483 lncRNA upstream 87583 7260860 ~ 7261065 (+) True G73224
TU83521 lncRNA downstream 18863 7372072 ~ 7372408 (+) True G73257
TU83522 lncRNA downstream 19380 7372589 ~ 7372814 (+) True G73258
TU83418 lncRNA downstream 42159 7395368 ~ 7400277 (+) False G73162
TU83419 lncRNA downstream 42159 7395368 ~ 7399433 (+) True G73162
TU83526 lncRNA downstream 67484 7420693 ~ 7421889 (+) True G73262
CI01000012_07312430_07315865.mRNA mRNA upstream 32731 7311672 ~ 7315917 (+) True CI01000012_07312430_07315865
CI01000012_07136101_07161117.mRNA mRNA upstream 187100 7136017 ~ 7161548 (+) True CI01000012_07136101_07161117
CI01000012_07120539_07126148.mRNA mRNA upstream 222376 7120539 ~ 7126272 (+) True CI01000012_07120539_07126148
CI01000012_07111569_07113225.mRNA mRNA upstream 235416 7111569 ~ 7113232 (+) True CI01000012_07111569_07113225
CI01000012_07108281_07109521.mRNA mRNA upstream 238726 7108281 ~ 7109922 (+) True CI01000012_07108281_07109521
CI01000012_07359292_07362314.mRNA mRNA downstream 5506 7358715 ~ 7362378 (+) True CI01000012_07359292_07362314
CI01000012_07401962_07405598.mRNA mRNA downstream 48753 7401962 ~ 7405598 (+) True CI01000012_07401962_07405598
CI01000012_07409605_07427042.mRNA mRNA downstream 55783 7408992 ~ 7427309 (+) True CI01000012_07409605_07427042
CI01000012_07429147_07434790.mRNA mRNA downstream 75938 7429147 ~ 7434846 (+) True CI01000012_07429147_07434790
CI01000012_07441851_07459661.mRNA mRNA downstream 88642 7441851 ~ 7459786 (+) True CI01000012_07441851_07459661
TU81687 other upstream 1424343 5923166 ~ 5924305 (+) True CI01000012_05923216_05928055
TU81634 other upstream 1532043 5813517 ~ 5816605 (+) False G71623
TU81545 other upstream 1787215 5550493 ~ 5561433 (+) False G71548
TU81201 other upstream 1808192 5538525 ~ 5540456 (+) True G71221
TU81198 other upstream 1810264 5535852 ~ 5538384 (+) True G71218
TU83614 other downstream 452894 7806103 ~ 7807855 (+) True CI01000012_07806089_07811902
TU83914 other downstream 1013597 8366806 ~ 8367627 (+) False G73578
TU83912 other downstream 1013795 8367004 ~ 8367627 (+) False G73578
TU83911 other downstream 1013868 8367077 ~ 8367627 (+) True G73578
TU85876 other downstream 2868746 10221955 ~ 10222037 (+) True G75291

Expression Profile