RNA id: TU84502


Basic Information

Item Value
RNA id TU84502
length 126
RNA type TUCP
GC content 0.47
exon number 1
gene id G74087
representative True

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 7355252 ~ 7355377 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CGTAATGTAGTTCGCCCTGCTGCTATATTTGCATGGCTCAGTCTCGCCATGGTCTCGCCTCAAATGTTTCTTTTGTATTGCACGTGGATCATCGGTGCTGCCTCTTTTAGGGTGAATGTTCCTGACAGGTATCTGCTGGCAATTCGGGGTCATCCAGCTGTTCTGGGCTGTGAGTTCACCCCTGATCCTGATCTGTCCAACCTGGTGATTACTTGGCAAAGATCGGAGAACTCACAGGTTGTCCACAGTTTCTATTATCAGCAGGACCAATTGGACCGCCAGAGTCCAGAATACCATAATCGGACATCATTGTTTATTTCAGAGCTTGGTAAAGGAAATGCCTCCCTTAGAATTAATTCAGTTGGACCTAAGGATGCCGGTCAGTACCTTTGCCAAGTGAGCAATGCTAAAGGGACGGGAAAAGACCAGATAGAGCTGGACTACGGGGCTCTTTACTCTGAGCCTAGGTTTTACATTCATGTGAACTCCACAACTGTGACAGTGCAGTTTGAGACGGAGGGATTCCCCAAACCTGAGGTGATCTGGCTGGGGGAACACGGCCAGAACCTCAGCTATCGCCTGGATCTCCATGACCAGACAGAAGATGGGCTTTATTTAGTTAAGAGCAGCTATGAGGCCCAGAAGCCAGCAGTTAATGTCACATTTACGCTAAAGAACCACCTCCTGAACCAGAACCTTCAGAGACCCGTGTGCCTCAGCTATGTTTCAAATGAGGCTGGAGGTAGAAGCTGGAAGATGGCGGCAATAATTTCTCTGTCGATAATAAGCATCATTCTTTTTGCTGTTGTGATGTTTTTACGATATAGAAAACCAATAAAATCGAACCCAT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU84528 lncRNA downstream 9468 7345481 ~ 7345784 (-) True G74113
TU84545 lncRNA downstream 17067 7334138 ~ 7338185 (-) True G74130
TU84519 lncRNA downstream 39017 7312027 ~ 7314714 (-) True G74104
TU84552 lncRNA downstream 86977 7266989 ~ 7268275 (-) True G74137
TU84727 lncRNA downstream 91227 7263770 ~ 7264025 (-) True G74296
TU84819 lncRNA upstream 205177 7563722 ~ 7563999 (-) True G74363
TU84837 lncRNA upstream 239368 7597913 ~ 7598119 (-) True G74376
TU84839 lncRNA upstream 242596 7601141 ~ 7601382 (-) True G74378
TU84843 lncRNA upstream 334831 7693376 ~ 7694697 (-) True G74381
TU84945 lncRNA upstream 474817 7833362 ~ 7836466 (-) True G74477
CI01000012_07322669_07329009.mRNA mRNA downstream 25740 7322633 ~ 7329512 (-) True CI01000012_07322669_07329009
CI01000012_07316139_07320354.mRNA mRNA downstream 34059 7316030 ~ 7321193 (-) False CI01000012_07316139_07320354
CI01000012_07268516_07270856.mRNA mRNA downstream 84396 7268488 ~ 7270856 (-) True CI01000012_07268516_07270856
CI01000012_07210006_07251043.mRNA mRNA downstream 104209 7209595 ~ 7251043 (-) True CI01000012_07210006_07251043
CI01000012_07164949_07166936.mRNA mRNA downstream 188316 7164839 ~ 7166936 (-) True CI01000012_07164949_07166936
CI01000012_07366635_07367888.mRNA mRNA upstream 7935 7366480 ~ 7367888 (-) True CI01000012_07366635_07367888
CI01000012_07368295_07372257.mRNA mRNA upstream 9750 7368295 ~ 7372257 (-) True CI01000012_07368295_07372257
CI01000012_07374223_07375676.mRNA mRNA upstream 15502 7374047 ~ 7375676 (-) True CI01000012_07374223_07375676
CI01000012_07379927_07381734.mRNA mRNA upstream 19989 7378534 ~ 7381734 (-) True CI01000012_07379927_07381734
CI01000012_07388341_07401600.mRNA mRNA upstream 29796 7388341 ~ 7401756 (-) True CI01000012_07388341_07401600
TU82841 other downstream 1207758 6147011 ~ 6147494 (-) True G72629
TU82465 other downstream 1889395 5462840 ~ 5465857 (-) True G72294
TU82391 other downstream 1938472 5363642 ~ 5364083 (-) False G72235
TU82393 other downstream 1938472 5363642 ~ 5364079 (-) True G72235
TU82349 other downstream 2053046 5293773 ~ 5302206 (-) True G72204
TU85146 other upstream 905784 8264329 ~ 8265654 (-) True G74648
TU85219 other upstream 1008474 8367019 ~ 8367627 (-) False G74701
TU85218 other upstream 1008536 8367081 ~ 8367627 (-) False G74701
TU85225 other upstream 1008536 8367081 ~ 8367643 (-) True G74701
TU85328 other upstream 1709361 9067906 ~ 9070667 (-) True CI01000012_09068458_09070536

Expression Profile