RNA id: CI01000012_07761466_07761786.mRNA


Basic Information

Item Value
RNA id CI01000012_07761466_07761786.mRNA
length 700
RNA type mRNA
GC content 0.46
exon number 1
gene id CI01000012_07761466_07761786
representative True

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 7761432 ~ 7762131 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGTGATGGATTCGGCATCCAGCTGTTTTACATCTACTTTTAATTCCTTTTGTAATACTTCCCTCTTGTAGAAATCCCATAAGCATCTTTTTGAAATGGAGACACACTAACACACGCATTCTCACACACACACTTCAGCGGACACAATGCACACACAATATAAACAAGCAGGGATTACAATGAGAACAGAAAAGGCTGATGTTGTCTCATGACCACACTTTTTCCACCAGGCGTTTCCCAAGAGATGTAAATTCCATCCTCTAATCTTATTTGTCATTGCATATTAGGGCCTTACTTGTGTTTACAAACCATATTCCTCTGCACTTGATACACAAGGCTAAGAGCTATGGAATCGAATCGGAGTGAAAGCCAATCCACGCTGGAGAAAACACAGTTTGGCCTGTTAGAGAAACGGGCTGAAGCACCTCCTCTAGTATCAAGAGGGGTAACAGTATCCCTGTTAGAATGTAACTGTTTATCATGGGCTAGTGTTCGGCAGGGGCTGCCAGAGCTGTGTGTGCTAAACAATGCACTCATTCAGGCCGTCGCGCATCTGCTAGTGATCTGGGACGGGACGTCGATACGCTCTCAAGGACGACGGCCTCTGGTCCGATCCAGAGGAGAGAGGAGGTCTCGTGCCACCGTATTCTACATGTGCCATGCGTGAGAGCGAATTCACCGGTGGACTGGAGATGAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU84843 lncRNA downstream 66735 7693376 ~ 7694697 (-) True G74381
TU84839 lncRNA downstream 160050 7601141 ~ 7601382 (-) True G74378
TU84837 lncRNA downstream 163313 7597913 ~ 7598119 (-) True G74376
TU84819 lncRNA downstream 197433 7563722 ~ 7563999 (-) True G74363
TU84528 lncRNA downstream 415648 7345481 ~ 7345784 (-) True G74113
TU84945 lncRNA upstream 71231 7833362 ~ 7836466 (-) True G74477
TU84964 lncRNA upstream 93168 7855299 ~ 7855653 (-) True G74490
TU84966 lncRNA upstream 107253 7869384 ~ 7869615 (-) True G74492
TU84972 lncRNA upstream 136486 7898617 ~ 7898858 (-) True G74498
TU84974 lncRNA upstream 140849 7902980 ~ 7903181 (-) True G74500
CI01000012_07716912_07750520.mRNA mRNA downstream 10912 7716655 ~ 7750520 (-) True CI01000012_07716912_07750520
CI01000012_07705100_07707005.mRNA mRNA downstream 54205 7703949 ~ 7707227 (-) True CI01000012_07705100_07707005
CI01000012_07556881_07563284.mRNA mRNA downstream 198039 7556106 ~ 7563393 (-) True CI01000012_07556881_07563284
CI01000012_07537907_07544112.mRNA mRNA downstream 217320 7537441 ~ 7544112 (-) True CI01000012_07537907_07544112
CI01000012_07504355_07506926.mRNA mRNA downstream 254506 7503460 ~ 7506926 (-) True CI01000012_07504355_07506926
CI01000012_07813654_07814853.mRNA mRNA upstream 50769 7812900 ~ 7814853 (-) True CI01000012_07813654_07814853
CI01000012_07925520_07928491.mRNA mRNA upstream 163325 7925456 ~ 7928491 (-) True CI01000012_07925520_07928491
CI01000012_07930029_07934648.mRNA mRNA upstream 167161 7929292 ~ 7934881 (-) True CI01000012_07930029_07934648
CI01000012_07938822_07940632.mRNA mRNA upstream 176683 7938814 ~ 7941045 (-) True CI01000012_07938822_07940632
CI01000012_07956050_07959414.mRNA mRNA upstream 193856 7955987 ~ 7959414 (-) True CI01000012_07956050_07959414
TU84502 other downstream 402887 7355252 ~ 7355377 (-) True G74087
TU82841 other downstream 1613938 6147011 ~ 6147494 (-) True G72629
TU82465 other downstream 2295575 5462840 ~ 5465857 (-) True G72294
TU82391 other downstream 2344652 5363642 ~ 5364083 (-) False G72235
TU85146 other upstream 502198 8264329 ~ 8265654 (-) True G74648
TU85219 other upstream 604888 8367019 ~ 8367627 (-) False G74701
TU85218 other upstream 604950 8367081 ~ 8367627 (-) False G74701
TU85225 other upstream 604950 8367081 ~ 8367643 (-) True G74701
TU85328 other upstream 1305775 9067906 ~ 9070667 (-) True CI01000012_09068458_09070536

Expression Profile