RNA id: CI01000012_07812015_07812349.mRNA


Basic Information

Item Value
RNA id CI01000012_07812015_07812349.mRNA
length 639
RNA type mRNA
GC content 0.41
exon number 1
gene id CI01000012_07812015_07812349
representative True

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 7812015 ~ 7812653 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATGCTGAAGTGAGGGAGATTGTCCAACAAAGTCTGTCTGTAGGAAATTTTGCTGCTCGCCTTCTCGTCCGTCTCTTCCCAGAGCTTTTCACACAGGAAAATTTAAGGCTGCAGTACAACCACTCTGGGGCCTGCAACAAGAAACAGCTAGACCCTGTGCGCCTCAGACTTATTCGTCATTACGTGGAGGCCGTCTACCCTGTTGACAAAATGGAGGAGGTATGGCACTATGAATGCGTGCCAAGCATTGACGAGCGCTGCAGGCGCCCCAATCGCAAGAAATGTGACATTCTAAAGAAGGCAAAGAGATCAAACAACACTGTGACTTATTCTTAAACAATGTTCCTGCAAAGTGCAGACCTGTTTTCCTATATTTTACACAACATACCTGTTATTTGCACAAGTCCATAAGCTGAAGCATATTGAAACTTGTCCTTGTTTGAGGTGCAGTTCATGTCCATGGCCTTTAAACAGGATGGGATAGTAGGTGACAGAAAGGTTTGTGATTGAAGCCACTATCACATGACAGATATTAGTGTTACTATTTATATGCCAAAATATTATTGATGTTATTCTAATGATTAATAGATAAGCTAAAGTTAGCCTTAAATCAACTTAAATGTAAACGTTTAGTTCTTTA

Function

GO:      GO:0005720, GO:0006306, GO:0000183, GO:0000182, GO:0043967, GO:0036124, GO:0000122, GO:0080182, GO:0034773, GO:0098532, GO:0006325, GO:0006351, GO:0005515, GO:0003677, GO:0005730

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU83641 lncRNA upstream 9892 7801921 ~ 7802123 (+) True G73346
TU83596 lncRNA upstream 77317 7734296 ~ 7734698 (+) True G73321
TU83434 lncRNA upstream 96569 7707675 ~ 7715446 (+) True G73175
TU83526 lncRNA upstream 390126 7420693 ~ 7421889 (+) True G73262
TU83419 lncRNA upstream 412582 7395368 ~ 7399433 (+) True G73162
TU83675 lncRNA downstream 42690 7855343 ~ 7855654 (+) True G73359
TU83679 lncRNA downstream 56745 7869398 ~ 7869602 (+) True G73363
TU83680 lncRNA downstream 67997 7880650 ~ 7880875 (+) True G73364
TU83686 lncRNA downstream 89796 7902449 ~ 7902830 (+) True G73370
TU83696 lncRNA downstream 106904 7919557 ~ 7919765 (+) True G73380
CI01000012_07806089_07811902.mRNA mRNA upstream 113 7805248 ~ 7811902 (+) False CI01000012_07806089_07811902
CI01000012_07769675_07800004.mRNA mRNA upstream 11774 7769200 ~ 7800241 (+) True CI01000012_07769675_07800004
CI01000012_07678377_07700760.mRNA mRNA upstream 109821 7678377 ~ 7702194 (+) True CI01000012_07678377_07700760
CI01000012_07645586_07647322.mRNA mRNA upstream 164053 7643680 ~ 7647962 (+) True CI01000012_07645586_07647322
CI01000012_07584742_07586196.mRNA mRNA upstream 225643 7584742 ~ 7586372 (+) True CI01000012_07584742_07586196
CI01000012_07817578_07821568.mRNA mRNA downstream 4925 7817578 ~ 7822023 (+) True CI01000012_07817578_07821568
CI01000012_07822979_07844745.mRNA mRNA downstream 9757 7822410 ~ 7845560 (+) True CI01000012_07822979_07844745
CI01000012_07847662_07849170.mRNA mRNA downstream 33891 7846544 ~ 7849734 (+) True CI01000012_07847662_07849170
CI01000012_08159919_08162280.mRNA mRNA downstream 346954 8159607 ~ 8162336 (+) True CI01000012_08159919_08162280
CI01000012_08234924_08239665.mRNA mRNA downstream 422106 8234759 ~ 8239885 (+) True CI01000012_08234924_08239665
TU83614 other upstream 4160 7806103 ~ 7807855 (+) True CI01000012_07806089_07811902
TU81687 other upstream 1887710 5923166 ~ 5924305 (+) True CI01000012_05923216_05928055
TU81634 other upstream 1995410 5813517 ~ 5816605 (+) False G71623
TU81545 other upstream 2250582 5550493 ~ 5561433 (+) False G71548
TU81201 other upstream 2271559 5538525 ~ 5540456 (+) True G71221
TU83914 other downstream 554153 8366806 ~ 8367627 (+) False G73578
TU83912 other downstream 554351 8367004 ~ 8367627 (+) False G73578
TU83911 other downstream 554424 8367077 ~ 8367627 (+) True G73578
TU85876 other downstream 2409302 10221955 ~ 10222037 (+) True G75291
TU86153 other downstream 3332164 11144817 ~ 11145739 (+) True G75533

Expression Profile