RNA id: CI01000012_08940340_08945093.mRNA


Basic Information

Item Value
RNA id CI01000012_08940340_08945093.mRNA
length 1879
RNA type mRNA
GC content 0.45
exon number 6
gene id CI01000012_08940340_08945093
representative True

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 8939668 ~ 8945424 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGTCACAAAGACATCTGGTCACTCCCTCCTTATGTGCGCGAGAGCGGATAAACTGGAGCGCTCAGTGATTGACGGTGGGAGTGCGATTGCTCTGCTGAGGTTGAGCAGGAGACTCGAGAATCGCGATTGCATAAAGACCATCTATTGGTACAGATGTTTTTGTTTTGTTTTTACTTCAGATCGGTTGCAGAGAAGTAGAAGTATTGTTTAAAGTTATTTTTTAAAAACGCAGATTATTGCAGCAATAGTTGGAGAACATCACTGTTGACGTGTGGCCATTTTTTTCTTTGCAGAGTGAAATATTCTCTCCACTCGCAAAGCACCGGGAAACATGTTTTACTTTCACTGTCCTCCACAGTTAGAAGGAGAGTGCTGCAGGACCAATACATTGAACACAAATGGGTTTGGGAATCACGCCTCTGGAGACTTTGATGACGGTTTTCTGCGCAGAAAACAACGCAGAAACAGGACAACCTTCACTTTACAACAGCTGGAGGCTTTGGAGGCGGTTTTTGCTCAGACCCACTATCCAGACGTGTTTACGAGAGAAGAGCTGGCTATGAAAATCAACTTAACAGAGGCTCGTGTTCAGGTGTGGTTTCAAAACCGACGAGCAAAGTGGAGAAAAACGGAGAGAGGAACTTCGGACCAGGAAGGAGGCAAAGAACAAATGAGTGAAGGCGCCCCTCCTGCAAGAAACCTCAACCAGTCTCCTGTTGAGCATGGCAGAAATAAGAAAGAACCAATGGAACTACAGCAGAATATTAACAGAATGGTGGGTTCAGGTGGACCTTTTTTCCCATCTTGTCTGCCTGGGACTCTGCTGAACACAGCCACTTATGCACAAGCCTTGTCACAAGTGGCAACTTTAAAAGGAAGTTCATTGTGTTCCTGCTGCGTGCCTGACCCAATGGGCCTCTCCTTCCTGCCACCATATGGGTGCCAGAGTAACCGGACAGCCAGTGTCGCAGCCCTGCGGATGAAAGCCAGAGAACATTCGGAGGCCGTTCTTCAATCAGCTAACCTGCTGGGAGCAGGGTCTACAACCGGGCCCGGAGCAGGTCCAGGGGTCGGTCTGGGACAAAGCACTGTTTCTGCAGGAGGAAGCGATTCCAGTCCTAACTCCGGTACCTCTAAGATCACATCACTACGGAGAACTCCAGACAAGCATCTGCACTGCCAAAAGGAGGGTCCGGATAAGAAATGAGGGAATCCTGGTTATTGTTTTTTTTTTCCTAATTGGAGGACACACTTTGGATGAAGGATTTATAATCAAACATTGAATGCCTGCTGCCTCTTTTTTGAGAGCACTGACATACCCTGGACAGGACGGTGTTAAGTGCAATCCCTTATTGTGTATTTTGTGTGTATGTATGTGTCAAACTAATTATTCAATTGTAATTTTTCCTCTCCTCGTTCACTTTTACACATGATTCTTGACATTGGTTTGCCCCGTTTGGGTCTACGTGGGCACCTGGCGCTGCAATTTGCGTGGTGGAATGACTTTTGAACATGCTGTGTGACAAAAGAAAACTCCCTGGTTGTCAATGTGAACTTCTTTAATTTTTCACAATCCACTTTGATGTTTGACTTGTGTATTGTGAAGTCAGGTGATGATAGACATTCTGCATTGTGTCAAGATATATGCCATGCTGAAATGTAAATGTACTAATGTGAAATAATATATGTAAGATAATATCAAGGACAGAACTGTATATTAAGTGGTTTGTCATGTTTTATGATATGATCCGGGTAACTCTTATTCATGCTGATGTGATGACAACTGACACCTCTCTTGTCGTCACATCTGTACGTCCGTGATAGACTGCAAGAGTCCACACACTGGTCCTGCTTTGACATGTTCTGTAAAACAATTAAA

Function

GO:

id name namespace
GO:0043565 sequence-specific DNA binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU85342 lncRNA downstream 75145 8862377 ~ 8864523 (-) True G74808
TU85350 lncRNA downstream 86663 8851072 ~ 8853005 (-) True G74816
TU85404 lncRNA downstream 99488 8839790 ~ 8840180 (-) True G74867
TU85376 lncRNA downstream 182474 8756985 ~ 8757194 (-) True G74842
TU85375 lncRNA downstream 189222 8750230 ~ 8750446 (-) True G74841
TU85421 lncRNA upstream 45614 8991038 ~ 8991246 (-) True G74882
TU85424 lncRNA upstream 47797 8993221 ~ 8993420 (-) True G74885
TU85426 lncRNA upstream 49186 8994610 ~ 8994899 (-) True G74887
TU85326 lncRNA upstream 53402 9006633 ~ 9006790 (-) True G74792
TU85460 lncRNA upstream 394776 9340200 ~ 9340405 (-) True G74921
CI01000012_08908244_08917212.mRNA mRNA downstream 22072 8907936 ~ 8917596 (-) True CI01000012_08908244_08917212
CI01000012_08841980_08849453.mRNA mRNA downstream 90111 8841521 ~ 8849557 (-) True CI01000012_08841980_08849453
CI01000012_08805894_08831322.mRNA mRNA downstream 108346 8805894 ~ 8831322 (-) True CI01000012_08805894_08831322
CI01000012_08745512_08773403.mRNA mRNA downstream 166265 8745227 ~ 8773403 (-) True CI01000012_08745512_08773403
CI01000012_08712109_08714569.mRNA mRNA downstream 223681 8711713 ~ 8715987 (-) True CI01000012_08712109_08714569
CI01000012_08947834_08963715.mRNA mRNA upstream 2272 8947696 ~ 8963812 (-) True CI01000012_08947834_08963715
CI01000012_09001061_09005079.mRNA mRNA upstream 55269 9000693 ~ 9005079 (-) False CI01000012_09001061_09005079
CI01000012_09068458_09070536.mRNA mRNA upstream 122946 9068370 ~ 9070765 (-) False CI01000012_09068458_09070536
CI01000012_09071892_09073410.mRNA mRNA upstream 126067 9071491 ~ 9073425 (-) False CI01000012_09071892_09073410
CI01000012_09082056_09083285.mRNA mRNA upstream 136453 9081877 ~ 9083483 (-) False CI01000012_09082056_09083285
TU85225 other downstream 572025 8367081 ~ 8367643 (-) True G74701
TU85219 other downstream 572041 8367019 ~ 8367627 (-) False G74701
TU85218 other downstream 572041 8367081 ~ 8367627 (-) False G74701
TU85146 other downstream 674014 8264329 ~ 8265654 (-) True G74648
TU84502 other downstream 1581123 7355252 ~ 7355377 (-) True G74087
TU85328 other upstream 122482 9067906 ~ 9070667 (-) True CI01000012_09068458_09070536
TU85325 other upstream 125947 9071371 ~ 9073457 (-) True CI01000012_09071892_09073410
TU85337 other upstream 137312 9082736 ~ 9083489 (-) True CI01000012_09082056_09083285
TU85327 other upstream 452652 9398076 ~ 9401968 (-) True CI01000012_09400481_09401810
TU85525 other upstream 630224 9575648 ~ 9575924 (-) False G74982

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00011989 False 1723 mRNA 0.46 7 NC_007124.7 30912117 ~ 30918278 (+)