RNA id: TU85328


Basic Information

Item Value
RNA id TU85328
length 1037
RNA type TUCP
GC content 0.37
exon number 4
gene id CI01000012_09068458_09070536
representative True

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 9067906 ~ 9070765 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TACTTAATACGGCAAAACAGGAAATGCGTAAAAGAGGGAAAGTGAGGGAGGAAAGCAGGACAGTTCTGTGCACACTCAAGTGCAAACGCACATAAGAGAGCCATCCTTGTGAATGACGCAGCTTTAGTAAAATGGCTTTCAGGACTATCAGCCTGCTGCTCATGCTCTTAGTCTGCTTACACTTCACAACAGAAAAGAGTACTGCTGCAATATCCTCTCGAGAAAAATGTGAGTGCATTGAGGAGACTGACTCGGTGCAATGGAGAAAAATCACAGACTACAAAATCATAGAGAAAGATCCTCTCTGCAACAAGGTTCAAATCATACTTCAGCTGCCAGGTAAAGAAGTTTGTCTAAATCCAGAGTCCAAGCAGGGGAAAAAACTGCAAAAATGTTGGAAAAGGATTAAATTCAACATACGGAAGAAGAAGGCCTGCCTGGTGTTCAAGAGGAAAAATGGACCAAAAAGTCCCAAGAAACATTAACTTAACAGTTCTTACCTTTTCTGTGTAGAAAGACTATATTCCTGTACTTCATCATTTACCCTGCCTCTCCTTTATTTGCACAAATAAAAGATATTTGTATTATATATATGGAATATGTATATATTGTTTTTGTACTGCTCATTTCTAATAAAACCTTTAAAAAATTGTTATTGGTATTTGTGTATTGCATTTTATGCACATATTTGTGCTAAATGACAGAATTTAAAAAATACAAATTATCAGAATGTGTCCCGATTTACCTGTATTCACCTAACTAAAACAAACAAAATGGCTCCCATTCAGTGAAGGAAAAGAATTTGAATATTCTATGAACTTACCCAACCTTTGTCTATGACCATCCTCATTAATTATTAATTATGCCATTTTAGCCTCATGGCAAGAAAACGCCTTTCAAGGGGGGGATATACACAATCTACTGTATCCACCAGAAAGAATCACACTCATAAAATGCTTTAGGCTGATTTAAACACAAGAGGTCCTGTCTAGAGATGCTCCCCACCTGCATAAAGAAATTACACTGTGAAGCCCCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU85326 lncRNA downstream 61116 9006633 ~ 9006790 (-) True G74792
TU85426 lncRNA downstream 73007 8994610 ~ 8994899 (-) True G74887
TU85424 lncRNA downstream 74486 8993221 ~ 8993420 (-) True G74885
TU85421 lncRNA downstream 76660 8991038 ~ 8991246 (-) True G74882
TU85342 lncRNA downstream 203383 8862377 ~ 8864523 (-) True G74808
TU85460 lncRNA upstream 269533 9340200 ~ 9340405 (-) True G74921
TU85358 lncRNA upstream 403637 9474304 ~ 9475994 (-) True G74824
TU85495 lncRNA upstream 416600 9487267 ~ 9487594 (-) True G74953
TU85496 lncRNA upstream 417203 9487870 ~ 9488107 (-) True G74954
TU85499 lncRNA upstream 419735 9490402 ~ 9490617 (-) True G74957
CI01000012_09001061_09005079.mRNA mRNA downstream 62827 9000693 ~ 9005079 (-) False CI01000012_09001061_09005079
CI01000012_08947834_08963715.mRNA mRNA downstream 104094 8947696 ~ 8963812 (-) True CI01000012_08947834_08963715
CI01000012_08940340_08945093.mRNA mRNA downstream 122482 8939668 ~ 8945424 (-) True CI01000012_08940340_08945093
CI01000012_08908244_08917212.mRNA mRNA downstream 150310 8907936 ~ 8917596 (-) True CI01000012_08908244_08917212
CI01000012_08841980_08849453.mRNA mRNA downstream 218349 8841521 ~ 8849557 (-) True CI01000012_08841980_08849453
CI01000012_09071892_09073410.mRNA mRNA upstream 824 9071491 ~ 9073425 (-) False CI01000012_09071892_09073410
CI01000012_09082056_09083285.mRNA mRNA upstream 11210 9081877 ~ 9083483 (-) False CI01000012_09082056_09083285
CI01000012_09164233_09178383.mRNA mRNA upstream 93434 9164101 ~ 9179268 (-) True CI01000012_09164233_09178383
CI01000012_09306970_09313413.mRNA mRNA upstream 235924 9306591 ~ 9315713 (-) True CI01000012_09306970_09313413
CI01000012_09358336_09370502.mRNA mRNA upstream 287431 9358098 ~ 9370620 (-) True CI01000012_09358336_09370502
TU85225 other downstream 700263 8367081 ~ 8367643 (-) True G74701
TU85219 other downstream 700279 8367019 ~ 8367627 (-) False G74701
TU85218 other downstream 700279 8367081 ~ 8367627 (-) False G74701
TU85146 other downstream 802252 8264329 ~ 8265654 (-) True G74648
TU84502 other downstream 1709361 7355252 ~ 7355377 (-) True G74087
TU85325 other upstream 704 9071371 ~ 9073457 (-) True CI01000012_09071892_09073410
TU85337 other upstream 12069 9082736 ~ 9083489 (-) True CI01000012_09082056_09083285
TU85327 other upstream 327409 9398076 ~ 9401968 (-) True CI01000012_09400481_09401810
TU85525 other upstream 504981 9575648 ~ 9575924 (-) False G74982
TU85530 other upstream 504981 9575648 ~ 9575972 (-) False G74982

Expression Profile