RNA id: TU85337


Basic Information

Item Value
RNA id TU85337
length 623
RNA type TUCP
GC content 0.50
exon number 2
gene id CI01000012_09082056_09083285
representative True

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 9081877 ~ 9083489 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTGAACAAACCAAACACAGACACAACCTCTGCACAACAATCACCACTCTGATCCTAGAAGCTTGTCCTACAGGATGAAACCCAGAAGATTACTCCTGTCTGTGGCTCCTCTACCGACAATAACAGAGTCGCATGAAGACCTCTCACAGTCCCTGGATGAATATGTAAACTCCATTAAAGAACTGGCCCAGCCTGCTTGCGGCCCTTTGAGAATATCCAGGACTCACAGGCGTAAACCCGTGGGGAAGCATGCGGGTTCTACCTCAACGCCGCGCAGCGCTTCCCGGGCTCTGCAGCCCCGCCGTGCTTCCCTTGGCCTGGACGAGGTCACGCTGAGGTTCAGCAGCCAGGTGGACTGCGGCACTAAAGATCCACTGGACTGGTTGTTTGCACAGACACACTTACAGTCACACGGTGAGAATTTGCGCAGGACTGACAGCGCACCTGCTGCTTTGTGGTTACTCTAATGCGCCAAATGCGTAATGACATGCTGATGGGAGGATAACTCTGAACGTTTGATGGATGAACGCAATGGAGGATCTCATGAACTGAACTTCTTAATTTATTGCTGAACAGACTTTTTGTACAAAGATGCTAATGTTTACACCCTGTCAAAGTCATGGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU85326 lncRNA downstream 75946 9006633 ~ 9006790 (-) True G74792
TU85426 lncRNA downstream 87837 8994610 ~ 8994899 (-) True G74887
TU85424 lncRNA downstream 89316 8993221 ~ 8993420 (-) True G74885
TU85421 lncRNA downstream 91490 8991038 ~ 8991246 (-) True G74882
TU85342 lncRNA downstream 218213 8862377 ~ 8864523 (-) True G74808
TU85460 lncRNA upstream 256711 9340200 ~ 9340405 (-) True G74921
TU85358 lncRNA upstream 390815 9474304 ~ 9475994 (-) True G74824
TU85495 lncRNA upstream 403778 9487267 ~ 9487594 (-) True G74953
TU85496 lncRNA upstream 404381 9487870 ~ 9488107 (-) True G74954
TU85499 lncRNA upstream 406913 9490402 ~ 9490617 (-) True G74957
CI01000012_09071892_09073410.mRNA mRNA downstream 9311 9071491 ~ 9073425 (-) False CI01000012_09071892_09073410
CI01000012_09068458_09070536.mRNA mRNA downstream 11971 9068370 ~ 9070765 (-) False CI01000012_09068458_09070536
CI01000012_09001061_09005079.mRNA mRNA downstream 77657 9000693 ~ 9005079 (-) False CI01000012_09001061_09005079
CI01000012_08947834_08963715.mRNA mRNA downstream 118924 8947696 ~ 8963812 (-) True CI01000012_08947834_08963715
CI01000012_08940340_08945093.mRNA mRNA downstream 137312 8939668 ~ 8945424 (-) True CI01000012_08940340_08945093
CI01000012_09164233_09178383.mRNA mRNA upstream 80612 9164101 ~ 9179268 (-) True CI01000012_09164233_09178383
CI01000012_09306970_09313413.mRNA mRNA upstream 223102 9306591 ~ 9315713 (-) True CI01000012_09306970_09313413
CI01000012_09358336_09370502.mRNA mRNA upstream 274609 9358098 ~ 9370620 (-) True CI01000012_09358336_09370502
CI01000012_09379379_09394499.mRNA mRNA upstream 295662 9379151 ~ 9395050 (-) True CI01000012_09379379_09394499
CI01000012_09400481_09401810.mRNA mRNA upstream 316855 9400344 ~ 9402378 (-) False CI01000012_09400481_09401810
TU85325 other downstream 9279 9071371 ~ 9073457 (-) True CI01000012_09071892_09073410
TU85328 other downstream 12069 9067906 ~ 9070667 (-) True CI01000012_09068458_09070536
TU85225 other downstream 715093 8367081 ~ 8367643 (-) True G74701
TU85219 other downstream 715109 8367019 ~ 8367627 (-) False G74701
TU85218 other downstream 715109 8367081 ~ 8367627 (-) False G74701
TU85327 other upstream 314587 9398076 ~ 9401968 (-) True CI01000012_09400481_09401810
TU85525 other upstream 492159 9575648 ~ 9575924 (-) False G74982
TU85530 other upstream 492159 9575648 ~ 9575972 (-) False G74982
TU86281 other upstream 1528426 10611915 ~ 10620871 (-) False G75608
TU86282 other upstream 1528426 10611915 ~ 10620871 (-) True G75608

Expression Profile