RNA id: CI01000012_09815706_09822346.mRNA


Basic Information

Item Value
RNA id CI01000012_09815706_09822346.mRNA
length 2350
RNA type mRNA
GC content 0.46
exon number 15
gene id CI01000012_09815706_09822346
representative True

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 9815706 ~ 9822671 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATGAGGTGGGCTGGCAGATGCGGCATCGAGCGAATGGAGTTTAGTGGGAGGAGCCTAAGAAAGAGGGAACTGGGAAAAGTGTCAGTGAGTGGATTTTCATCTTTCTTCACTGAATTCTATAACTTTGAGGATGCCGGTTTTGAAAAGGGAACAAGCAAGAGACACGGGAGATCCAAGTTGCCCCCTTTGCAGCAAACACTGGACATGTACCTGAAGTGCATGAGTCACCTCATACCAGAGGAGCAGTTCAGAAAGACAAAGGCTATTGTAGAGAAATTTGGAGTACCTGGTGGAATGGGAGAATTTCTTCAGAAAAAGTTACTGGAGAGAAGCGATCTTAAGGCCAATTGGGTGTATGACTACTGGCTCGAAGACATGTATTTGAGCAACAGATTAGCACTACCTGTCAACTCCAGTCCTGTTATGGTCTTTCCTAAGCAGAACTTCAGGTGTCAAAGTGATGTCCTCAGATTTGCTGCCCATCTCATTTCTGGCATATTAGAGTATAAATCTCTTATTGATGGGCGTGCCCTCCCTGTAGACTACGCTCGAGGGCAGCTGGCCGGGACGCCCCTGTGTATGGATCAGTACAACAAGGTCTTCACCTCCTACCGTCTGCCGGGGCCAAAAACCGACACTTTAGTGGCTCAGAAGAGCACAGTTATGCCTGAGCCCGAACATATAATAGTGGCTTGTAAGAATCAGTTTTTTGTTCTCGATGTGGTGATAAACTTTCGTCGACTGAATGAAAAAGACCTTTACACTCAGCTGGAGCGAATCAGAAAGATGGCAGACATTGAAGAGGAGTGTCTGCCTCCTATCGGTCTGCTCACATCAGATGGCAGAACTCAGTGGGCCGAGGCTCGCAGCGTACTTATCAAAGATTCTACCAACAGGGACTCTCTAGACATGATTGAACGCTGTCTGTGTCTGGTGTGTTTGGACGAGCCGTCTGGCATTGAACTGACTGATACCAATCGAGCTTCACTGATGCTCCACGGAGGGGGCATGGAAAAAAATGGGGGCAACCGCTGGTACGACAAGCCCATGCAGTTTGTGATAGGTGCAGACGGATGCTGCGGTGTTGTATGTGAACACTCCCCTTTTGAGGGAATAGTGCTGGTGCAATGTACAGAGTATCTACTGAGATACATGAGAGGAAGCCCTTCTAAACTGGTGAGAGCGGCCAGCATGAGTGAGCTTCCTGCCCCCAGACGACTGCGCTGGAAATGCTCATCAGATATCCAAAAGCTCCTCATGGCCTCAGAAGATAAATTACAGAGACTTGTGAAAAATCTGGATATGAATGTCAGCAAATTCACTGGTTATGGCAAAGAGTTCATCAAGAGACAGAAAATGAGCCCTGATGCTTATGTTCAAGTTGCCCTCCAGTTTGCATTTTACAGATGTCACGGACGTCTAGTGCCCACCTATGAAAGTGCATCAATACGCCGCTTTCAAGAGGGACGAGTTGACAACATTCGCTCTTCCACACCTGAGGCCTTTGCATTTGTGAAAGCTATGGCCAACAGCTCCAAAATCACTGATGCTGAGAAAATGGAGATGCTTTGGACTGCCATTAAAGCCCAAACCAATTATACAATTCTAGCAATCACTGGGATGGCAATAGACAATCACTTGTTGGGGCTGCGAGAGATTGCCAAGGAGCTAAAACTCGAAAAGCCAGAGCTGTTTTCTGATACAACCTATACCACCAGCATCCAGTTCATTCTATCTACAAGCCAGGTTCCTACCACTGAGGAGATGTTCTGCTGCTATGGTCCTGTTGTCCCTAACGGCTACGGAGCCTGCTACAATCCTCAGACGGACCACATCATCTTCTGTGTGTCAAGCTTCCGTGACAGTGCTGAGACCAGCTCAGATTTGTTTGTGAAGACTCTTGAGGGATGCCTGAAGGAAATGCAAGATCTATGCCAAAAATGCAACACTGAAGCTAAACCAGCTGATTCCACAGAAGGGATGGAGGGAACTCCCAAGGTAATGAAGAATGGAAGCAAGTCATAGCAAAAAGCTAAAATGTTTAAATCGCATGGAAGATGCAGGAAGAAACCAATGTGACTGTACAAAGAGTAAACATTTCAGGAGAAAATCATAGTCTCAAAAATATAGCAAGGATCATGGACTGATTTAGTGAATACATTTGATATGCAAAAGAATTGAAGTAGGCATTCCCCTTAGGTATTTCCTCTATATTACAGATATAGAGAAGTGATATACAGATTATAACAGAAGTGGCATAGAGATTCTATGGAGCTGCAGTCGCTTGACAATAGTACTAAGTAGATCTATTTAGGTGTTTTGCAATATTTGGCCTATGAGAGCATACAGA

Function

GO:

id name namespace
GO:0004102 choline O-acetyltransferase activity molecular_function

KEGG:

id description
K00623 CHAT; choline O-acetyltransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU85608 lncRNA upstream 73458 9741467 ~ 9742248 (+) True G75055
TU84423 lncRNA upstream 184899 9616330 ~ 9630807 (+) True G74017
TU84420 lncRNA upstream 199617 9612580 ~ 9616089 (+) True G74014
TU84456 lncRNA upstream 239699 9575594 ~ 9576007 (+) True G74045
TU84455 lncRNA upstream 239787 9575594 ~ 9575919 (+) False G74045
TU85646 lncRNA downstream 35619 9858290 ~ 9858518 (+) True G75087
TU85648 lncRNA downstream 37008 9859679 ~ 9859954 (+) True G75089
TU85676 lncRNA downstream 98702 9921373 ~ 9922152 (+) True G75113
TU85681 lncRNA downstream 108863 9931534 ~ 9931876 (+) True G75115
TU85713 lncRNA downstream 163441 9986112 ~ 9986370 (+) True G75147
CI01000012_09812937_09814478.mRNA mRNA upstream 289 9812421 ~ 9815417 (+) True CI01000012_09812937_09814478
CI01000012_09796386_09801947.mRNA mRNA upstream 13162 9796291 ~ 9802544 (+) True CI01000012_09796386_09801947
CI01000012_09764936_09778598.mRNA mRNA upstream 36305 9764582 ~ 9779401 (+) True CI01000012_09764936_09778598
CI01000012_09503160_09508216.mRNA mRNA upstream 307330 9501951 ~ 9508376 (+) True CI01000012_09503160_09508216
CI01000012_09487818_09493571.mRNA mRNA upstream 321460 9487818 ~ 9494246 (+) True CI01000012_09487818_09493571
CI01000012_09828421_09828926.mRNA mRNA downstream 5750 9828421 ~ 9829388 (+) True CI01000012_09828421_09828926
CI01000012_09977219_09983804.mRNA mRNA downstream 154340 9977011 ~ 9983866 (+) True CI01000012_09977219_09983804
CI01000012_10196272_10198737.mRNA mRNA downstream 373601 10196272 ~ 10198816 (+) True CI01000012_10196272_10198737
CI01000012_10223957_10235955.mRNA mRNA downstream 401026 10223697 ~ 10236276 (+) False CI01000012_10223957_10235955
CI01000012_10244843_10249396.mRNA mRNA downstream 422172 10244843 ~ 10249499 (+) True CI01000012_10244843_10249396
TU83914 other upstream 1448079 8366806 ~ 8367627 (+) False G73578
TU83912 other upstream 1448079 8367004 ~ 8367627 (+) False G73578
TU83911 other upstream 1448079 8367077 ~ 8367627 (+) True G73578
TU83614 other upstream 2007851 7806103 ~ 7807855 (+) True CI01000012_07806089_07811902
TU81687 other upstream 3891401 5923166 ~ 5924305 (+) True CI01000012_05923216_05928055
TU85876 other downstream 399284 10221955 ~ 10222037 (+) True G75291
TU86153 other downstream 1322146 11144817 ~ 11145739 (+) True G75533
TU87145 other downstream 2808084 12630755 ~ 12675666 (+) True G76385
TU87131 other downstream 2922860 12745531 ~ 12749169 (+) False G76374
TU87240 other downstream 3192835 13015506 ~ 13023794 (+) True G76462

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00012874 True 2105 mRNA 0.47 15 NC_007124.7 29409359 ~ 29421331 (-)