RNA id: TU85876


Basic Information

Item Value
RNA id TU85876
length 83
RNA type TUCP
GC content 0.52
exon number 1
gene id G75291
representative True

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 10221955 ~ 10222037 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTCCTGGGTGAAATGGAGGGAAGGCACTACCGTTGGGAGGCTCCTTTGGGGAGTACAGCTTGAATGACTTGGACGAACAGCCTGCAGGAATTCGACGCTCTCTCTCCCCGGTGCTCCCTGATTATAATCCCGGTCTGTCGGTCGCTGTTTTTAAAACGAGGTGAGCTGAAACATCGGCCCCTTCAAACCATCGTGGTGTGCAAAAAACAGGTACAAAATGCAGTTGCAGCGCTGGTAGTAGTAGACTGTGTTAAACAAGAACCGGACTCAAGGGGCAACGAGGAAAAGTGCCCGTGCAACCCTTTGTTCTTGATCATGAACAATGGTACAGGCCCTTCTTTCTCTCCGTGCAACCCCCCTCAACACT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU85925 lncRNA upstream 6736 10214916 ~ 10215219 (+) True G75340
TU85924 lncRNA upstream 7151 10214562 ~ 10214804 (+) True G75339
TU85859 lncRNA upstream 27957 10192989 ~ 10193998 (+) True G75277
TU85852 lncRNA upstream 81886 10138297 ~ 10140069 (+) True G75272
TU85896 lncRNA upstream 127785 10093847 ~ 10094170 (+) True G75311
TU85856 lncRNA downstream 50378 10274665 ~ 10277003 (+) False G75276
TU85857 lncRNA downstream 50378 10274665 ~ 10277003 (+) True G75276
TU85934 lncRNA downstream 68926 10293213 ~ 10293445 (+) True G75349
TU85940 lncRNA downstream 94706 10318993 ~ 10319285 (+) True G75355
TU85941 lncRNA downstream 96255 10320542 ~ 10320760 (+) True G75356
CI01000012_10196272_10198737.mRNA mRNA upstream 23139 10196272 ~ 10198816 (+) True CI01000012_10196272_10198737
CI01000012_09977219_09983804.mRNA mRNA upstream 238089 9977011 ~ 9983866 (+) True CI01000012_09977219_09983804
CI01000012_09828421_09828926.mRNA mRNA upstream 392567 9828421 ~ 9829388 (+) True CI01000012_09828421_09828926
CI01000012_09815706_09822346.mRNA mRNA upstream 399284 9815706 ~ 9822671 (+) True CI01000012_09815706_09822346
CI01000012_09812937_09814478.mRNA mRNA upstream 406538 9812421 ~ 9815417 (+) True CI01000012_09812937_09814478
CI01000012_10244843_10249396.mRNA mRNA downstream 20556 10244843 ~ 10249499 (+) True CI01000012_10244843_10249396
CI01000012_10260457_10272063.mRNA mRNA downstream 35448 10259735 ~ 10272262 (+) True CI01000012_10260457_10272063
CI01000012_10296725_10299883.mRNA mRNA downstream 72341 10296628 ~ 10301555 (+) True CI01000012_10296725_10299883
CI01000012_10469322_10470665.mRNA mRNA downstream 244296 10468583 ~ 10471373 (+) True CI01000012_10469322_10470665
CI01000012_10489814_10496226.mRNA mRNA downstream 265440 10489727 ~ 10496584 (+) True CI01000012_10489814_10496226
TU83914 other upstream 1854328 8366806 ~ 8367627 (+) False G73578
TU83912 other upstream 1854328 8367004 ~ 8367627 (+) False G73578
TU83911 other upstream 1854328 8367077 ~ 8367627 (+) True G73578
TU83614 other upstream 2414100 7806103 ~ 7807855 (+) True CI01000012_07806089_07811902
TU81687 other upstream 4297650 5923166 ~ 5924305 (+) True CI01000012_05923216_05928055
TU86153 other downstream 920530 11144817 ~ 11145739 (+) True G75533
TU87145 other downstream 2406468 12630755 ~ 12675666 (+) True G76385
TU87131 other downstream 2521244 12745531 ~ 12749169 (+) False G76374
TU87240 other downstream 2791219 13015506 ~ 13023794 (+) True G76462
TU87436 other downstream 3427572 13651859 ~ 13652234 (+) True G76645

Expression Profile