RNA id: CI01000012_10799203_10801485.mRNA



Basic Information


Item Value
RNA id CI01000012_10799203_10801485.mRNA
length 1125
RNA type mRNA
GC content 0.45
exon number 2
gene id CI01000012_10799203_10801485
representative True

Chromosome Information


Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 10798778 ~ 10801537 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


AGTTGTTAACATTCATAATGTTATTAATAAAAAGAGTGACTTACACAAAGGCATGGTAAATGAATGCCCAGGCTCGCGGTCGCTCCAGGACATTGTAGAGGTAGTTCTGGAGCTTCCTGTAGCGCGCGTTTCTCCGGCCGCTTTGCGCGCTGTAGGCGAGCGGTTTTCCCAGCAGGCTCAGCCGGGCGCCCTGCTTTCTCCTCTGGTTCTCCGAGCCTCCTGCACCTGTTGTGCCCGGCGCCGACAGCAAACTGTCGACCGTCCTGGTCGCGTTGTTCATCGTCCCACGACCGGCTTCAACATCTTTCATGCCATAGTGCTGCGAGGTCTTCATCCAGAGACCAGTACCGCCCTCATCGCCGCTGTGGTTGCGGGGCATCGCATCACCAGCGCAGGCTGGAAACGCGCGTCTGGCACCAGCGCTGACGATGTCCTCCAAAAATGTACTGCGATAAAGTTAATCAAGCTTGGGGGATCTCTCTGTCACAAACATTTAACACCCCTGTGCCCCCATCATCTTGAATCGACTTACAAAAGTGATGTGTATGAATTAACTACAATAGTTTTCTACTTACTGTGGTGGCAGAACAGATTCTCCTCAATAGACACTTTATATAGACACCAACCAACAAGACTTAGGCTCATAACTGAGTCTTTCTGGGTTCCTAAACGGGGCTCAATTGAAATCGCTTCAGTCTGATCCGGTAATCACGGAGCCCACAGAACTAGCGGAGCCGCTGCCAGACAAACCACGTGATCTGAAAAGAAATAAGCCGGTAAGCGGTATACAGTTGAATTAGCAAGTAAACTGTTCATATTTCAATGATGTGAACGATATTTTATTGCATTCTACATATTTGTATATAACTATTTTTTTATTTTATATTCTACCTGGTAGCCTATATAATGTTAGTGTTTTCTTCATCATTCAACAGAGGGAAGCAGGGGAAGTTGGTGCACTATGAGTGCTCTTTTACACTTGTCTCTCTATCACAAGTTTTATTCTTTTAATATTATCAGTTTTATGCTTATTAGGTTGCCCTGTTAGACTCTATTTCCCCCCACTATTTTTTCATTATGCATGGCTAATTCAAATACTTTGGCTTAAAAAAAAATCACATTAAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU86503 lncRNA downstream 2124 10796420 ~ 10796654 (-) True G75814
TU86273 lncRNA downstream 7569 10764163 ~ 10791209 (-) True G75607
TU86482 lncRNA downstream 34698 10714098 ~ 10764080 (-) False G75796
TU86481 lncRNA downstream 34698 10736721 ~ 10764080 (-) True G75796
TU86287 lncRNA downstream 94995 10687849 ~ 10703783 (-) False G75609
TU86565 lncRNA upstream 118684 10920221 ~ 10922346 (-) True G75875
TU86590 lncRNA upstream 121185 10922722 ~ 10927672 (-) True G75892
TU86630 lncRNA upstream 317983 11119520 ~ 11119825 (-) True G75931
TU86631 lncRNA upstream 318406 11119943 ~ 11121104 (-) True G75932
TU86632 lncRNA upstream 319767 11121304 ~ 11121901 (-) True G75933
CI01000012_10705713_10710443.mRNA mRNA downstream 88335 10705713 ~ 10710443 (-) True CI01000012_10705713_10710443
CI01000012_10696109_10703071.mRNA mRNA downstream 95592 10695756 ~ 10703186 (-) False CI01000012_10696109_10703071
CI01000012_10639383_10640319.mRNA mRNA downstream 157930 10639161 ~ 10640848 (-) True CI01000012_10639383_10640319
CI01000012_10626417_10638842.mRNA mRNA downstream 159815 10625889 ~ 10638963 (-) True CI01000012_10626417_10638842
CI01000012_10395715_10408849.mRNA mRNA downstream 389929 10395628 ~ 10408849 (-) True CI01000012_10395715_10408849
CI01000012_10837437_10841732.mRNA mRNA upstream 35878 10837415 ~ 10841804 (-) True CI01000012_10837437_10841732
CI01000012_10934571_10937915.mRNA mRNA upstream 132962 10934499 ~ 10937915 (-) True CI01000012_10934571_10937915
CI01000012_10939589_10944243.mRNA mRNA upstream 137418 10938955 ~ 10944243 (-) True CI01000012_10939589_10944243
CI01000012_10947838_10952009.mRNA mRNA upstream 146301 10947838 ~ 10952009 (-) True CI01000012_10947838_10952009
CI01000012_10958668_10973745.mRNA mRNA upstream 156797 10958334 ~ 10973745 (-) True CI01000012_10958668_10973745
TU86281 other downstream 177907 10611915 ~ 10620871 (-) False G75608
TU86282 other downstream 177907 10611915 ~ 10620871 (-) True G75608
TU85530 other downstream 1222806 9575648 ~ 9575972 (-) False G74982
TU85525 other downstream 1222854 9575648 ~ 9575924 (-) False G74982
TU85327 other downstream 1396810 9398076 ~ 9401968 (-) True CI01000012_09400481_09401810
TU87807 other upstream 1247507 12049044 ~ 12049222 (-) True G76984
TU87842 other upstream 1277399 12080546 ~ 12080752 (-) False G77017
TU87843 other upstream 1277399 12080546 ~ 12083845 (-) True G77017
TU87800 other upstream 2152909 12954446 ~ 12955664 (-) True CI01000012_12954694_12954954
TU88148 other upstream 2817739 13619276 ~ 13633819 (-) True G77287

Expression Profile