RNA id: CI01000012_12270454_12276521.mRNA



Basic Information


Item Value
RNA id CI01000012_12270454_12276521.mRNA
length 701
RNA type mRNA
GC content 0.47
exon number 3
gene id CI01000012_12270454_12276521
representative True

Chromosome Information


Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 12270346 ~ 12276625 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


TTATATATTGGAGATTATGAGCCACATTTCATCCCAGTAATAATATTATTTCCATATGACATTGAAAAGTTTATTTTTCCGACCTGACTGCTTGTAGCAGCAAACAAGATGGCTGCCAGAGTCTTCAGGCTCCTTCAGAGCATAAACTGTCAAGCCTTTTACTCGATTTGTAGATGTTGGCATCCCAGCATACAGTGTAGCATGGACGTGCGTGCCCAGGGATATTACAGTACTGAGGAGGAGTTGTCTTACATGCTGCTTCTGGCTTCCCATAGAGACAGCCCTCCAAACTCAAACCTAATTAAAGTGAAGGCAGTGTCCGGGATCATTTCTCCGGCTCCCAAAAGTGTCGAAAAGAGAAAAGAAGAGTGGAGCAGCACAGCCCCGTCGGTGTTTGCGCAGCGCTACCGCTGCGTTTCCCTTGACTTGCCAAAGCTAACAGGGGCTGGATGTGGAGAGGCAAATTTGCCAGCGTTAACTCGGATAAACGAGCTTTTCATTCAAAGACGACCTTCTCGTCATAATCTCAGGCAGGGCTGTCAAGGCCTGGCCCCTCTCTTCCTGGATCACTTGCCCAGGTTTTTAACAGGAACCTAGGGGTCTGAGAAACATGGCGAAGGGGTGGGGGGTGTTTTTTTTTTTTTTTTTTTTTTTTTAGAATGGAGACCTGGAATGATCTGCATCTCAGGTGCCACGGCTCA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU87067 lncRNA upstream 101891 12168168 ~ 12168455 (+) True G76318
TU87065 lncRNA upstream 105114 12164961 ~ 12165232 (+) True G76316
TU87064 lncRNA upstream 105935 12164183 ~ 12164411 (+) True G76315
TU87055 lncRNA upstream 159700 12110427 ~ 12110646 (+) True G76306
TU87048 lncRNA upstream 193222 12076910 ~ 12077124 (+) True G76299
TU87077 lncRNA downstream 156274 12432899 ~ 12433158 (+) True G76327
TU86971 lncRNA downstream 157044 12433669 ~ 12435061 (+) True G76222
TU86979 lncRNA downstream 159406 12436031 ~ 12436325 (+) True G76230
TU86993 lncRNA downstream 160487 12437112 ~ 12437490 (+) True G76244
TU87078 lncRNA downstream 161069 12437694 ~ 12437915 (+) True G76328
CI01000012_12220568_12234927.mRNA mRNA upstream 35083 12219998 ~ 12235263 (+) True CI01000012_12220568_12234927
CI01000012_12173747_12212480.mRNA mRNA upstream 57061 12173388 ~ 12213285 (+) True CI01000012_12173747_12212480
CI01000012_12159352_12162539.mRNA mRNA upstream 107507 12158648 ~ 12162839 (+) True CI01000012_12159352_12162539
CI01000012_12128962_12130578.mRNA mRNA upstream 138219 12128446 ~ 12132127 (+) True CI01000012_12128962_12130578
CI01000012_12054427_12060390.mRNA mRNA upstream 209956 12054427 ~ 12060390 (+) True CI01000012_12054427_12060390
CI01000012_12292583_12371612.mRNA mRNA downstream 15958 12292583 ~ 12371612 (+) True CI01000012_12292583_12371612
CI01000012_12378120_12378419.mRNA mRNA downstream 101495 12378120 ~ 12378662 (+) True CI01000012_12378120_12378419
CI01000012_12381049_12417489.mRNA mRNA downstream 103567 12380192 ~ 12418697 (+) True CI01000012_12381049_12417489
CI01000012_12440074_12465741.mRNA mRNA downstream 163449 12440074 ~ 12466032 (+) True CI01000012_12440074_12465741
CI01000012_12489485_12490402.mRNA mRNA downstream 212662 12489287 ~ 12490431 (+) True CI01000012_12489485_12490402
TU86153 other upstream 1124607 11144817 ~ 11145739 (+) True G75533
TU85876 other upstream 2046059 10221955 ~ 10222037 (+) True G75291
TU83914 other upstream 3902719 8366806 ~ 8367627 (+) False G73578
TU87145 other downstream 354130 12630755 ~ 12675666 (+) True G76385
TU87131 other downstream 468906 12745531 ~ 12749169 (+) False G76374
TU87240 other downstream 738881 13015506 ~ 13023794 (+) True G76462
TU87436 other downstream 1375234 13651859 ~ 13652234 (+) True G76645
TU87448 other downstream 1426862 13703487 ~ 13718704 (+) False G76656

Expression Profile