RNA id: TU87800


Basic Information

Item Value
RNA id TU87800
length 653
RNA type TUCP
GC content 0.43
exon number 2
gene id CI01000012_12954694_12954954
representative True

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 12954446 ~ 12957833 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CCTTCCGCTCCTGTTACAGCCTGTTTCCTCGCACAGCAACTGAGCTAACAACTGAGCACTGTTAAAGCGTCCGTTTATTTACTTTTCTCACATCTTTCTCCGGTTTTTTTTTCACCATAGAAACACAGATTTTTCTAACTGAAGATGACAGACCGCTACAACATCCACAGTCAGCTGGAGCATCTGCAGTCGAAGTACATCGGCACGGGCCACGCAGACACTAGCAAATGGGAATGGCTAGTTAACCAGCACAGAGACTCATACTGCTCCTACATGGGCCATTTCGACCTTCTCAATTACTTTGCCATCGCTGAGAATGAGAGCAAGGCTCGTGTCCGCTTTAACCTGATGGAGAAGATGCTGCAACCATGTGGTCCACCAGCCGACAAACCTGAAGATGCTTAGGGCTTGCGACTGAATCCCTACTCGATGTTTTATAAGGCTCTGCTTTTGATGTGTTCATTGAGCGATGCGCTGAGAGATCAGAGAGAGAGAGAGACCCTGGACACATGGGGGTTGTGGGTGCTCTTTAAATCAATGTTTTGTTTTTTGTTTTTTTTTGTTTTTTTAATGCTGATTTTTTTTTTTTTGTGATATTTTGTATAGGTTGTTGAACTGAAAGTGTATTAAGAAAATAAAGTTGATACCCTAAC

Function

GO:

id name namespace
GO:0071011 precatalytic spliceosome cellular_component

KEGG:

id description
K12832 SF3B5, SF3B10; splicing factor 3B subunit 5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU88053 lncRNA downstream 32644 12921578 ~ 12921802 (-) True G77207
TU88051 lncRNA downstream 35133 12918932 ~ 12919313 (-) True G77205
TU88048 lncRNA downstream 37773 12916431 ~ 12916673 (-) True G77202
TU88047 lncRNA downstream 40523 12913698 ~ 12913923 (-) True G77201
TU88046 lncRNA downstream 41335 12912848 ~ 12913111 (-) True G77200
TU88086 lncRNA upstream 86349 13042013 ~ 13042222 (-) True G77237
TU88087 lncRNA upstream 86877 13042541 ~ 13042765 (-) True G77238
TU88098 lncRNA upstream 106241 13061905 ~ 13062333 (-) True G77243
TU88094 lncRNA upstream 126327 13081991 ~ 13083934 (-) True G77241
TU88109 lncRNA upstream 138616 13094280 ~ 13094498 (-) True G77254
CI01000012_12902396_12904687.mRNA mRNA downstream 48825 12902161 ~ 12905621 (-) True CI01000012_12902396_12904687
CI01000012_12872801_12891084.mRNA mRNA downstream 63362 12871862 ~ 12891084 (-) True CI01000012_12872801_12891084
CI01000012_12811846_12819195.mRNA mRNA downstream 135085 12811734 ~ 12819361 (-) True CI01000012_12811846_12819195
CI01000012_12783994_12795809.mRNA mRNA downstream 157877 12783924 ~ 12796569 (-) True CI01000012_12783994_12795809
CI01000012_12751670_12759821.mRNA mRNA downstream 194625 12751273 ~ 12759821 (-) True CI01000012_12751670_12759821
CI01000012_12960774_12964242.mRNA mRNA upstream 4037 12959701 ~ 12964929 (-) True CI01000012_12960774_12964242
CI01000012_12977279_12978570.mRNA mRNA upstream 21358 12977022 ~ 12978817 (-) True CI01000012_12977279_12978570
CI01000012_13015424_13018020.mRNA mRNA upstream 59710 13015374 ~ 13019645 (-) True CI01000012_13015424_13018020
CI01000012_13041401_13060443.mRNA mRNA upstream 84988 13040652 ~ 13060443 (-) True CI01000012_13041401_13060443
CI01000012_13085906_13090647.mRNA mRNA upstream 128453 13084117 ~ 13090653 (-) True CI01000012_13085906_13090647
TU87842 other downstream 870186 12080546 ~ 12080752 (-) False G77017
TU87843 other downstream 870186 12080546 ~ 12083845 (-) True G77017
TU87807 other downstream 902239 12049044 ~ 12049222 (-) True G76984
TU86281 other downstream 2333575 10611915 ~ 10620871 (-) False G75608
TU86282 other downstream 2333575 10611915 ~ 10620871 (-) True G75608
TU88148 other upstream 663612 13619276 ~ 13633819 (-) True G77287

Expression Profile