RNA id: CI01000012_12977279_12978570.mRNA


Basic Information

Item Value
RNA id CI01000012_12977279_12978570.mRNA
length 861
RNA type mRNA
GC content 0.43
exon number 2
gene id CI01000012_12977279_12978570
representative True

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 12977022 ~ 12978817 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATACGCGGTATGAGCGACGCTCGATACAATTTCACGAGGGTAATGTAAGAACAGCGGGGATAGATTTATCACAGAGTCATAATTAAAAAGGACTTGTAGCCTAGGTATACTCGCAGCAGCAATCTCAGAAGAACGGTTGGGACTCCGAGCGTTTTGAAGTCGGACAGGTATCGATATCAAAGAACGTGACTGATAAACCGCACGCGCTTAAAGAACTTGGGCGAATCTCACCCGTACAGCATTTGCCATGGAAACCACTGGCAACATTTCGGACTTTCTCTATGCGCTTTCTAACCCAGTGATGTCGAACAGCAGCGTATTCTGCCGAAACTTCAGCAACAGCTCCAGTCTCGTGAACATGAACAGCTCCAGATGTGACAGGACGGCTGAGCTGGACAAAAGCTCAACTCCTGTGATAGTGGCGATCATCATCACTGCATTATATTCTATAGTGTGTGTGTTGGGACTAGTGGGCAACGTCCTCGTCATGTATGTTATTGTAAGAGATGCTGTGTTTAATACAGTGGATACAACTTTTATATCCTTCTTAAACAGCATAATATTTAGTCAACAGATATTAGCAGATATCGCTTATGGAGCGTAAAGACATACAGGAATTGATCAATTTGTTTTTAATTGCTAAAGTATTGACCCCTGTGTAAGGTCACCTGATTTTCTTTGCTTTGTAGAGCCTCAGTGCTTTCCGAGAGTTTATGAGCAACCAGTCAGAGTTTTAGAGGCAGCTTCCTACAGTGGGAAGTAAAAGAAAGCTATAGCCCAGTAGGTGCAATCTACTTCTGTGATTAATGAGCCGATTGCAGTCTGGGATTGGTTTATCGAGCCCCATCATGTGGTAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU88053 lncRNA downstream 55220 12921578 ~ 12921802 (-) True G77207
TU88051 lncRNA downstream 57709 12918932 ~ 12919313 (-) True G77205
TU88048 lncRNA downstream 60349 12916431 ~ 12916673 (-) True G77202
TU88047 lncRNA downstream 63099 12913698 ~ 12913923 (-) True G77201
TU88046 lncRNA downstream 63911 12912848 ~ 12913111 (-) True G77200
TU88086 lncRNA upstream 63196 13042013 ~ 13042222 (-) True G77237
TU88087 lncRNA upstream 63724 13042541 ~ 13042765 (-) True G77238
TU88098 lncRNA upstream 83088 13061905 ~ 13062333 (-) True G77243
TU88094 lncRNA upstream 103174 13081991 ~ 13083934 (-) True G77241
TU88109 lncRNA upstream 115463 13094280 ~ 13094498 (-) True G77254
CI01000012_12960774_12964242.mRNA mRNA downstream 12093 12959701 ~ 12964929 (-) True CI01000012_12960774_12964242
CI01000012_12954694_12954954.mRNA mRNA downstream 19189 12954460 ~ 12957833 (-) False CI01000012_12954694_12954954
CI01000012_12902396_12904687.mRNA mRNA downstream 71401 12902161 ~ 12905621 (-) True CI01000012_12902396_12904687
CI01000012_12872801_12891084.mRNA mRNA downstream 85938 12871862 ~ 12891084 (-) True CI01000012_12872801_12891084
CI01000012_12811846_12819195.mRNA mRNA downstream 157661 12811734 ~ 12819361 (-) True CI01000012_12811846_12819195
CI01000012_13015424_13018020.mRNA mRNA upstream 36557 13015374 ~ 13019645 (-) True CI01000012_13015424_13018020
CI01000012_13041401_13060443.mRNA mRNA upstream 61835 13040652 ~ 13060443 (-) True CI01000012_13041401_13060443
CI01000012_13085906_13090647.mRNA mRNA upstream 105300 13084117 ~ 13090653 (-) True CI01000012_13085906_13090647
CI01000012_13231532_13268248.mRNA mRNA upstream 252715 13231532 ~ 13268248 (-) True CI01000012_13231532_13268248
CI01000012_13277959_13281157.mRNA mRNA upstream 298960 13277777 ~ 13282518 (-) True CI01000012_13277959_13281157
TU87800 other downstream 21358 12954446 ~ 12955664 (-) True CI01000012_12954694_12954954
TU87842 other downstream 892762 12080546 ~ 12080752 (-) False G77017
TU87843 other downstream 892762 12080546 ~ 12083845 (-) True G77017
TU87807 other downstream 924815 12049044 ~ 12049222 (-) True G76984
TU86282 other downstream 2356151 10611915 ~ 10620871 (-) True G75608
TU88148 other upstream 640459 13619276 ~ 13633819 (-) True G77287

Expression Profile