RNA id: TU87368


Basic Information

Item Value
RNA id TU87368
length 700
lncRNA type sense_over
GC content 0.29
exon number 1
gene id CI01000012_13471010_13484053
representative True

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 13471010 ~ 13486220 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGGGGAGTTGGAAAATGAGCCTATTTTCAAAAAAAGTGGAGTGTTCCTTTAATTTTCACAAAGATACTCAATGATCTGATTATTGTGTACTCCTACAAATCTGGGAGTTTTCATGACCATCGTTTATATGTTGTGCTTCTCATAATATTTTTTTCTTTTTCAAGTTCAACATATTTCTGTCAGAGCATCATGTGTACATCTTTGGGTATATCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATTGTGCCAAAGGGTGGTAGTTTTTATATCCTCTATTCTGTCTCTTTTTTTGTATGAACAAAAAATCCAAGTAAACTGTATATTTTAATATAGTTTTTTTTATGATAAATACATAAGATGGTTGTTTCTTGTATTTAAATGACAGGAGAGTCATCAGATGGCATATTTAAAGTTTCTACAGTTTTATGTAAATTTTCACCATATATTGCATTTGTTTCAGTGTCATTATTCAATGAAAAATAATTGCAAATAAACAGGTTGATGTGAATAATATTAAGCCTTAACATTACACAAGCCTTAACATCTATTCTTTTATTTTCTTTCTCTTTGTTTGGGCTTTTCTGATATCTTTTGTGTGATTTCTCTGTCTATGCATTGACTTCACTGTTAAAGCTCGAGTATTGCCCTGAACACAGTGAGTGTCCTGCTGAATGAATGAATAAATGATGTTTACAGA

Function

GO:

id name namespace
GO:0005887 integral component of plasma membrane cellular_component

KEGG:

id description
K17297 TSPAN15; tetraspanin-15

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU87352 lncRNA upstream 43857 13441354 ~ 13441664 (+) True CI01000012_13442338_13442897
TU87350 lncRNA upstream 96368 13388853 ~ 13389153 (+) True G76569
TU87348 lncRNA upstream 98143 13387048 ~ 13387378 (+) True G76567
TU87347 lncRNA upstream 98877 13386436 ~ 13386644 (+) True G76566
TU87346 lncRNA upstream 112977 13372080 ~ 13372544 (+) True G76565
TU87388 lncRNA downstream 34772 13520992 ~ 13521318 (+) True G76600
TU87386 lncRNA downstream 41007 13527227 ~ 13527572 (+) True CI01000012_13527966_13529695
TU87382 lncRNA downstream 52301 13538521 ~ 13539179 (+) True G76594
TU87417 lncRNA downstream 69773 13555993 ~ 13556230 (+) True G76629
TU87418 lncRNA downstream 71205 13557425 ~ 13557687 (+) True G76630
CI01000012_13445338_13452629.mRNA mRNA upstream 32892 13444855 ~ 13452629 (+) True CI01000012_13445338_13452629
CI01000012_13442338_13442897.mRNA mRNA upstream 42302 13440853 ~ 13443219 (+) False CI01000012_13442338_13442897
CI01000012_13404454_13437477.mRNA mRNA upstream 47799 13404454 ~ 13437722 (+) True CI01000012_13404454_13437477
CI01000012_13391082_13401374.mRNA mRNA upstream 83829 13391082 ~ 13401692 (+) True CI01000012_13391082_13401374
CI01000012_13291350_13311094.mRNA mRNA upstream 173365 13291350 ~ 13312156 (+) True CI01000012_13291350_13311094
CI01000012_13498541_13510228.mRNA mRNA downstream 12321 13498541 ~ 13510265 (+) True CI01000012_13498541_13510228
CI01000012_13522084_13525252.mRNA mRNA downstream 35864 13522084 ~ 13525319 (+) True CI01000012_13522084_13525252
CI01000012_13527966_13529695.mRNA mRNA downstream 40964 13527184 ~ 13529762 (+) False CI01000012_13527966_13529695
CI01000012_13533459_13538332.mRNA mRNA downstream 47170 13533390 ~ 13538443 (+) True CI01000012_13533459_13538332
CI01000012_13551086_13554035.mRNA mRNA downstream 64553 13550773 ~ 13554312 (+) True CI01000012_13551086_13554035
TU87240 other upstream 446622 13015506 ~ 13023794 (+) True G76462
TU87131 other upstream 736352 12745531 ~ 12749169 (+) False G76374
TU87145 other upstream 809855 12630755 ~ 12675666 (+) True G76385
TU86153 other upstream 2339782 11144817 ~ 11145739 (+) True G75533
TU85876 other upstream 3261234 10221955 ~ 10222037 (+) True G75291
TU87436 other downstream 165639 13651859 ~ 13652234 (+) True G76645
TU87448 other downstream 217267 13703487 ~ 13718704 (+) False G76656

Expression Profile