RNA id: TU77913


Basic Information

Item Value
RNA id TU77913
length 316
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G68395
representative True

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 391754 ~ 392069 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTTCTTTCAAAATTTCATGAGGCCAAAGGTGCCCCTAATTAAAACCCCATGAAGAACATGCATGTTTATGAACATTAATGACCAGTGAATTCAGGTTGACTGGGACACTTTTTGCCATTGAGATGACTGGGAAAATGTTCCTGATCAACCTGAATATATGCCAAATAATGAATGTTTGTGTATCAAAATAAATTGTCCATTTATATCACTGATCATCATTGTATATCCAGGTACACAAGTCACACATGGTCAAAACAACGCATGGCAGAGAATAACAAAAGGTTGCAAAAATCTTTATTAGGCCACTGATTTTGGA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU77777 lncRNA upstream 46696 344660 ~ 345058 (+) True G68272
TU77891 lncRNA upstream 76089 315371 ~ 315665 (+) True G68373
TU77778 lncRNA upstream 82653 308774 ~ 309101 (+) True G68273
TU77772 lncRNA upstream 84761 298619 ~ 306993 (+) True G68267
TU77880 lncRNA upstream 146983 244035 ~ 244771 (+) True G68364
TU77915 lncRNA downstream 3800 395869 ~ 396136 (+) True G68397
TU77921 lncRNA downstream 23519 415588 ~ 416059 (+) True G68402
TU77943 lncRNA downstream 41452 433521 ~ 433762 (+) True G68409
TU77944 lncRNA downstream 43820 435889 ~ 436368 (+) True G68410
TU77950 lncRNA downstream 65929 457998 ~ 458724 (+) True G68416
CI01000012_00318129_00318595.mRNA mRNA upstream 72336 318129 ~ 319418 (+) True CI01000012_00318129_00318595
CI01000012_00194370_00195347.mRNA mRNA upstream 196078 193903 ~ 195676 (+) False CI01000012_00194370_00195347
CI01000012_00030966_00032941.mRNA mRNA upstream 358699 28818 ~ 33055 (+) True CI01000012_00030966_00032941
CI01000012_00502185_00516358.mRNA mRNA downstream 108082 500151 ~ 516908 (+) True CI01000012_00502185_00516358
CI01000012_00593086_00594741.mRNA mRNA downstream 200057 592126 ~ 595465 (+) True CI01000012_00593086_00594741
CI01000012_00644021_00646785.mRNA mRNA downstream 251952 644021 ~ 647075 (+) True CI01000012_00644021_00646785
CI01000012_00886127_00889703.mRNA mRNA downstream 493051 885120 ~ 890337 (+) True CI01000012_00886127_00889703
CI01000012_00979848_00986445.mRNA mRNA downstream 587779 979848 ~ 986745 (+) True CI01000012_00979848_00986445
TU77769 other upstream 185980 192246 ~ 205774 (+) True G68264
TU77788 other upstream 331222 26390 ~ 60532 (+) True G68282
TU78227 other downstream 143497 535566 ~ 535953 (+) True G68660
TU78303 other downstream 291454 683523 ~ 684578 (+) False G68725
TU78307 other downstream 291454 683523 ~ 684696 (+) False G68725
TU78309 other downstream 291454 683523 ~ 684856 (+) False G68725
TU78310 other downstream 291454 683523 ~ 684788 (+) True G68725

Expression Profile