RNA id: TU78170


Basic Information

Item Value
RNA id TU78170
length 269
lncRNA type intronic
GC content 0.31
exon number 1
gene id G68604
representative True

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 439483 ~ 439751 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTTGCTTCGTTACTCAATGAATGACTCAATGACTCACTCATAAAAACAGTGACTTGCTGCCACCTACTGGTGGTTTTAGTTTAATATTTAAAAGTATCACTTCATTTTACCATCATTGCATATTTCTCTATTGAACATTTTTTATTTAAAACATTATTTATTTTATAAAGTTATTCATAAAGGTAAAAATATGCACGGGAAAATCAATTTAGGGGGCAAATATTGTCCCTTAATGGAAAAAGTGTGACTGCAGTCTAAGTGGAAGAGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU78168 lncRNA downstream 1943 437262 ~ 437540 (-) True G68602
TU78166 lncRNA downstream 2894 436371 ~ 436589 (-) True G68600
TU78155 lncRNA downstream 23020 416194 ~ 416463 (-) True G68592
TU78154 lncRNA downstream 23904 415394 ~ 415579 (-) True G68591
TU78152 lncRNA downstream 25594 413561 ~ 413889 (-) True G68589
TU78175 lncRNA upstream 12220 451971 ~ 452172 (-) True G68609
TU78183 lncRNA upstream 20235 459986 ~ 460225 (-) True G68616
TU78184 lncRNA upstream 21093 460844 ~ 461061 (-) True G68617
TU78194 lncRNA upstream 48691 488442 ~ 489050 (-) True G68627
TU78195 lncRNA upstream 49503 489254 ~ 489577 (-) True G68628
CI01000012_00382850_00384215.mRNA mRNA downstream 55057 381711 ~ 384426 (-) True CI01000012_00382850_00384215
CI01000012_00340814_00363240.mRNA mRNA downstream 76243 340665 ~ 363240 (-) True CI01000012_00340814_00363240
CI01000012_00260363_00261340.mRNA mRNA downstream 177975 260296 ~ 261508 (-) True CI01000012_00260363_00261340
CI01000012_00223417_00223713.mRNA mRNA downstream 215334 223215 ~ 224149 (-) True CI01000012_00223417_00223713
CI01000012_00178282_00181473.mRNA mRNA downstream 256471 178182 ~ 183012 (-) False CI01000012_00178282_00181473
CI01000012_00520655_00552630.mRNA mRNA upstream 80388 520139 ~ 553820 (-) True CI01000012_00520655_00552630
CI01000012_00647774_00648451.mRNA mRNA upstream 207835 647586 ~ 648945 (-) True CI01000012_00647774_00648451
CI01000012_00686760_00686993.mRNA mRNA upstream 246770 686521 ~ 686993 (-) True CI01000012_00686760_00686993
CI01000012_00689933_00695237.mRNA mRNA upstream 249343 689094 ~ 695264 (-) True CI01000012_00689933_00695237
CI01000012_00863269_00864644.mRNA mRNA upstream 422289 862040 ~ 865072 (-) True CI01000012_00863269_00864644
TU78086 other downstream 259521 179563 ~ 179962 (-) True CI01000012_00178282_00181473
TU78856 other upstream 125712 565463 ~ 566956 (-) True G69150
TU78867 other upstream 147853 587604 ~ 588015 (-) True G69161
TU79003 other upstream 290169 729920 ~ 730465 (-) True G69277
TU79074 other upstream 335613 775364 ~ 775746 (-) False G69332
TU79075 other upstream 335613 775364 ~ 775879 (-) False G69332

Expression Profile