RNA id: TU78183



Basic Information


Item Value
RNA id TU78183
length 240
lncRNA type intronic
GC content 0.42
exon number 1
gene id G68616
representative True

Chromosome Information


Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 459986 ~ 460225 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


TTTTGCGGTGTGTTCCACATGTCAGCGGTAGTTTGCATGTTGAATTGGCATCGGGACTGTCGGTGAGAGTGGGTACTCTGATTCGATGTTCAGTTTAGTGAACAAGTCAAGTCAAGATTGAAGCAAAAGAGAGCAAGTAAGTCAGGACGGCACAGACAGAAGGCTGGTTTAATGTTATGTTATCCTACCCGAGCATTCCAAAACGTAAATATTTTCATAACAACATGAGCCTCTTAAAAT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU78175 lncRNA downstream 7814 451971 ~ 452172 (-) True G68609
TU78170 lncRNA downstream 20235 439483 ~ 439751 (-) True G68604
TU78168 lncRNA downstream 22446 437262 ~ 437540 (-) True G68602
TU78166 lncRNA downstream 23397 436371 ~ 436589 (-) True G68600
TU78155 lncRNA downstream 43523 416194 ~ 416463 (-) True G68592
TU78184 lncRNA upstream 619 460844 ~ 461061 (-) True G68617
TU78194 lncRNA upstream 28217 488442 ~ 489050 (-) True G68627
TU78195 lncRNA upstream 29029 489254 ~ 489577 (-) True G68628
TU78203 lncRNA upstream 38608 498833 ~ 499081 (-) True G68636
TU78205 lncRNA upstream 41197 501422 ~ 501948 (-) True G68638
CI01000012_00382850_00384215.mRNA mRNA downstream 75560 381711 ~ 384426 (-) True CI01000012_00382850_00384215
CI01000012_00340814_00363240.mRNA mRNA downstream 96746 340665 ~ 363240 (-) True CI01000012_00340814_00363240
CI01000012_00260363_00261340.mRNA mRNA downstream 198478 260296 ~ 261508 (-) True CI01000012_00260363_00261340
CI01000012_00223417_00223713.mRNA mRNA downstream 235837 223215 ~ 224149 (-) True CI01000012_00223417_00223713
CI01000012_00178282_00181473.mRNA mRNA downstream 276974 178182 ~ 183012 (-) False CI01000012_00178282_00181473
CI01000012_00520655_00552630.mRNA mRNA upstream 59914 520139 ~ 553820 (-) True CI01000012_00520655_00552630
CI01000012_00647774_00648451.mRNA mRNA upstream 187361 647586 ~ 648945 (-) True CI01000012_00647774_00648451
CI01000012_00686760_00686993.mRNA mRNA upstream 226296 686521 ~ 686993 (-) True CI01000012_00686760_00686993
CI01000012_00689933_00695237.mRNA mRNA upstream 228869 689094 ~ 695264 (-) True CI01000012_00689933_00695237
CI01000012_00863269_00864644.mRNA mRNA upstream 401815 862040 ~ 865072 (-) True CI01000012_00863269_00864644
TU78086 other downstream 280024 179563 ~ 179962 (-) True CI01000012_00178282_00181473
TU78856 other upstream 105238 565463 ~ 566956 (-) True G69150
TU78867 other upstream 127379 587604 ~ 588015 (-) True G69161
TU79003 other upstream 269695 729920 ~ 730465 (-) True G69277
TU79074 other upstream 315139 775364 ~ 775746 (-) False G69332
TU79075 other upstream 315139 775364 ~ 775879 (-) False G69332

Expression Profile