RNA id: TU78194


Basic Information

Item Value
RNA id TU78194
length 609
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G68627
representative True

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 488442 ~ 489050 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATTTAAAGCCATTGTCTTCCCCATATTACTTGGTTGTGTATTGTTTATGTAACCCTGCTGTCGGTGAGTCTTATAGTCAAGTCTGCTCATAGTCAAGTCTGCTCATAGTCAAGTCAAGTGGTTGCTTTGTTTGTTTGTTCACACTGTTACAATAAACTGCACTTGGGTTCATCATCTCACCTTCAGTTTGGACTGGATCGTTACAGAATACACGACCCTTACAATGAACCCAGTAGTTTCTCGCCTCTTGAGCCTCCGTCAAGGTAAACAATCCATTGAGGATTATGTTCAGGATTTTTGTGACGTGTGCTGTCATGTGCATTTGAAGACGAAAAAAGACATTTTTCGCCATGGACTTAATGAACCTGTACGTTCATGGCTTCCTGGTGGAAAGATTCACTGGTCCTTAGGAATATATAGATCATGCCCTTGTGCTAAGCGGTTCCTCATTTACTGTGGGAATTGTGGATGAGGAGTCCCACAAAACCCCAGTACCCACCACATCAGAGTGTCTTCAAGTCCTGTTCACTCCAAGCAAGCCAGGTCAATGCCTGTTCATGTGATGTCTTCCACGCCACAGACATTTACATTTACATTTACTCATTTGGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU78184 lncRNA downstream 27381 460844 ~ 461061 (-) True G68617
TU78183 lncRNA downstream 28217 459986 ~ 460225 (-) True G68616
TU78175 lncRNA downstream 36270 451971 ~ 452172 (-) True G68609
TU78170 lncRNA downstream 48691 439483 ~ 439751 (-) True G68604
TU78168 lncRNA downstream 50902 437262 ~ 437540 (-) True G68602
TU78195 lncRNA upstream 204 489254 ~ 489577 (-) True G68628
TU78203 lncRNA upstream 9783 498833 ~ 499081 (-) True G68636
TU78205 lncRNA upstream 12372 501422 ~ 501948 (-) True G68638
TU78206 lncRNA upstream 14544 503594 ~ 503802 (-) True G68639
TU78211 lncRNA upstream 28608 517658 ~ 517865 (-) True G68644
CI01000012_00427641_00472235.mRNA mRNA downstream 15865 427573 ~ 472577 (-) True CI01000012_00427641_00472235
CI01000012_00382850_00384215.mRNA mRNA downstream 104016 381711 ~ 384426 (-) True CI01000012_00382850_00384215
CI01000012_00340814_00363240.mRNA mRNA downstream 125202 340665 ~ 363240 (-) True CI01000012_00340814_00363240
CI01000012_00260363_00261340.mRNA mRNA downstream 226934 260296 ~ 261508 (-) True CI01000012_00260363_00261340
CI01000012_00223417_00223713.mRNA mRNA downstream 264293 223215 ~ 224149 (-) True CI01000012_00223417_00223713
CI01000012_00520655_00552630.mRNA mRNA upstream 31089 520139 ~ 553820 (-) True CI01000012_00520655_00552630
CI01000012_00647774_00648451.mRNA mRNA upstream 158536 647586 ~ 648945 (-) True CI01000012_00647774_00648451
CI01000012_00686760_00686993.mRNA mRNA upstream 197471 686521 ~ 686993 (-) True CI01000012_00686760_00686993
CI01000012_00689933_00695237.mRNA mRNA upstream 200044 689094 ~ 695264 (-) True CI01000012_00689933_00695237
CI01000012_00863269_00864644.mRNA mRNA upstream 372990 862040 ~ 865072 (-) True CI01000012_00863269_00864644
TU78086 other downstream 308480 179563 ~ 179962 (-) True CI01000012_00178282_00181473
TU78856 other upstream 76413 565463 ~ 566956 (-) True G69150
TU78867 other upstream 98554 587604 ~ 588015 (-) True G69161
TU79003 other upstream 240870 729920 ~ 730465 (-) True G69277
TU79074 other upstream 286314 775364 ~ 775746 (-) False G69332
TU79075 other upstream 286314 775364 ~ 775879 (-) False G69332

Expression Profile