RNA id: TU78205


Basic Information

Item Value
RNA id TU78205
length 527
lncRNA type antisense_over
GC content 0.42
exon number 1
gene id G68638
representative True

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 501422 ~ 501948 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CGATCGCAATCTTTCTGATCGGCGAAACCAACTTTCCGTAACGTGAAAGCGCTTGTGTCAAAATATCCTCACTAAGGAATGGAGGGATATTCGATATTGTGACTTTCTTTGATGGTAACATTAGAGGCAAAACAGGTGTAAGTATTTCATCAATTATTATTCCTCGCGCTACCACCTCGTTTGCTCTTTCCACCGTATTAAAAAAAATCACGGTCGCGTTATTCATTCTGGATGCAGAGAGAATGTTTTGATGGCCAACAACTTCTACACCCAGCAAGCCTCCACACTCACCACAGATACTATTTTAACTCTGTGACGCCGTGTGAGGAAATCAAGCCCATTCCCACCCTGAGCTGCCATGCTTTCTAAGAAAGCAGGCAGCACGAGCAAAACACACGCAAGATAAATACTAAATCAAATAAACAAACTTAGAAGTAAAAAAAAAAAAAAGGAAACAGAAAAAAGCAAATACATGCGCTCTCACACACGCCCACGCATGTGCAGAGAGAGAGAGAGAGAGAGAGAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU78203 lncRNA downstream 2341 498833 ~ 499081 (-) True G68636
TU78195 lncRNA downstream 11845 489254 ~ 489577 (-) True G68628
TU78194 lncRNA downstream 12372 488442 ~ 489050 (-) True G68627
TU78184 lncRNA downstream 40361 460844 ~ 461061 (-) True G68617
TU78183 lncRNA downstream 41197 459986 ~ 460225 (-) True G68616
TU78206 lncRNA upstream 1646 503594 ~ 503802 (-) True G68639
TU78211 lncRNA upstream 15710 517658 ~ 517865 (-) True G68644
TU78190 lncRNA upstream 24991 526939 ~ 527306 (-) True G68623
TU78860 lncRNA upstream 76036 577984 ~ 579539 (-) True G69154
TU78863 lncRNA upstream 80846 582794 ~ 583234 (-) True G69157
CI01000012_00427641_00472235.mRNA mRNA downstream 28845 427573 ~ 472577 (-) True CI01000012_00427641_00472235
CI01000012_00382850_00384215.mRNA mRNA downstream 116996 381711 ~ 384426 (-) True CI01000012_00382850_00384215
CI01000012_00340814_00363240.mRNA mRNA downstream 138182 340665 ~ 363240 (-) True CI01000012_00340814_00363240
CI01000012_00260363_00261340.mRNA mRNA downstream 239914 260296 ~ 261508 (-) True CI01000012_00260363_00261340
CI01000012_00223417_00223713.mRNA mRNA downstream 277273 223215 ~ 224149 (-) True CI01000012_00223417_00223713
CI01000012_00520655_00552630.mRNA mRNA upstream 18191 520139 ~ 553820 (-) True CI01000012_00520655_00552630
CI01000012_00647774_00648451.mRNA mRNA upstream 145638 647586 ~ 648945 (-) True CI01000012_00647774_00648451
CI01000012_00686760_00686993.mRNA mRNA upstream 184573 686521 ~ 686993 (-) True CI01000012_00686760_00686993
CI01000012_00689933_00695237.mRNA mRNA upstream 187146 689094 ~ 695264 (-) True CI01000012_00689933_00695237
CI01000012_00863269_00864644.mRNA mRNA upstream 360092 862040 ~ 865072 (-) True CI01000012_00863269_00864644
TU78086 other downstream 321460 179563 ~ 179962 (-) True CI01000012_00178282_00181473
TU78856 other upstream 63515 565463 ~ 566956 (-) True G69150
TU78867 other upstream 85656 587604 ~ 588015 (-) True G69161
TU79003 other upstream 227972 729920 ~ 730465 (-) True G69277
TU79074 other upstream 273416 775364 ~ 775746 (-) False G69332
TU79075 other upstream 273416 775364 ~ 775879 (-) False G69332

Expression Profile