RNA id: TU78211


Basic Information

Item Value
RNA id TU78211
length 208
lncRNA type inter_gene
GC content 0.56
exon number 1
gene id G68644
representative True

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 517658 ~ 517865 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTGCCAGTTTGCAGTCCCTCTTTCTGGACCCCTCCTCTGGAGGCTAGTGCTTTAGAGATTCTGTTTTGGTACAGACAGGTTGCTGGCCAGACTAGGTTTCTACTAAGTAGGACCAGGTCGGCCTCCCTGGTGGCAGTCAGGGTAGACTATGCTCCCCTGAGAAGTGACTGGTCGGGGCTCCTTTCGGCTCCCTGGCCACATTCCCTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU78206 lncRNA downstream 13856 503594 ~ 503802 (-) True G68639
TU78205 lncRNA downstream 15710 501422 ~ 501948 (-) True G68638
TU78203 lncRNA downstream 18577 498833 ~ 499081 (-) True G68636
TU78195 lncRNA downstream 28081 489254 ~ 489577 (-) True G68628
TU78194 lncRNA downstream 28608 488442 ~ 489050 (-) True G68627
TU78190 lncRNA upstream 9074 526939 ~ 527306 (-) True G68623
TU78860 lncRNA upstream 60119 577984 ~ 579539 (-) True G69154
TU78863 lncRNA upstream 64929 582794 ~ 583234 (-) True G69157
TU78904 lncRNA upstream 109477 627342 ~ 627646 (-) False G69193
TU78907 lncRNA upstream 109477 627342 ~ 627685 (-) True G69193
CI01000012_00427641_00472235.mRNA mRNA downstream 45081 427573 ~ 472577 (-) True CI01000012_00427641_00472235
CI01000012_00382850_00384215.mRNA mRNA downstream 133232 381711 ~ 384426 (-) True CI01000012_00382850_00384215
CI01000012_00340814_00363240.mRNA mRNA downstream 154418 340665 ~ 363240 (-) True CI01000012_00340814_00363240
CI01000012_00260363_00261340.mRNA mRNA downstream 256150 260296 ~ 261508 (-) True CI01000012_00260363_00261340
CI01000012_00223417_00223713.mRNA mRNA downstream 293509 223215 ~ 224149 (-) True CI01000012_00223417_00223713
CI01000012_00520655_00552630.mRNA mRNA upstream 2274 520139 ~ 553820 (-) True CI01000012_00520655_00552630
CI01000012_00647774_00648451.mRNA mRNA upstream 129721 647586 ~ 648945 (-) True CI01000012_00647774_00648451
CI01000012_00686760_00686993.mRNA mRNA upstream 168656 686521 ~ 686993 (-) True CI01000012_00686760_00686993
CI01000012_00689933_00695237.mRNA mRNA upstream 171229 689094 ~ 695264 (-) True CI01000012_00689933_00695237
CI01000012_00863269_00864644.mRNA mRNA upstream 344175 862040 ~ 865072 (-) True CI01000012_00863269_00864644
TU78086 other downstream 337696 179563 ~ 179962 (-) True CI01000012_00178282_00181473
TU78856 other upstream 47598 565463 ~ 566956 (-) True G69150
TU78867 other upstream 69739 587604 ~ 588015 (-) True G69161
TU79003 other upstream 212055 729920 ~ 730465 (-) True G69277
TU79074 other upstream 257499 775364 ~ 775746 (-) False G69332
TU79075 other upstream 257499 775364 ~ 775879 (-) False G69332

Expression Profile