RNA id: TU78227


Basic Information

Item Value
RNA id TU78227
length 388
RNA type TUCP
GC content 0.48
exon number 1
gene id G68660
representative True

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 535566 ~ 535953 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CAACAACCTAATGCCAAGGCCTTTGGGAAAAGGTTTGGTTAGCTTATATTTACGTTTCACTTGGTCAGGTGATCAGTCCTGCGCTGGGAAATGTCTTCCACTGGTATCATTTGTTTGCAGTGGGAGAGACTGGATTGCTTTCCAACAGTTGCAGAGCTGCACTGAGGGCTGGCTGCATTCTGTAGGTTGGAGGTACTTGAGTTATGCAGATCAGGAGCCAAAGTCCTCTGCAAAAGCAGTTGGGCTGCTTGAAGGTCCGTGCGGTGAAAGGTTTACTCGCAAGAGTATAACCTTGGTCGTGCTGTTGTTCTTCCCTCGTCAGGTCAGAAACTCAGAACATGGGTTTGTTCACTTGGGAAAGCTTTTATTCCTTCCCGTTGCATTGTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU77955 lncRNA upstream 8260 526974 ~ 527306 (+) True G68421
TU77988 lncRNA upstream 13142 522083 ~ 522424 (+) True G68453
TU77985 lncRNA upstream 17672 517685 ~ 517894 (+) True G68450
TU77963 lncRNA upstream 45909 489299 ~ 489657 (+) True G68429
TU77959 lncRNA upstream 53614 481744 ~ 481952 (+) True G68425
TU78223 lncRNA downstream 30769 566722 ~ 566959 (+) True G68656
TU78224 lncRNA downstream 40286 576239 ~ 576507 (+) True G68657
TU78220 lncRNA downstream 52084 588037 ~ 588420 (+) True G68653
TU78263 lncRNA downstream 91230 627183 ~ 627618 (+) False G68690
TU78264 lncRNA downstream 91376 627329 ~ 627618 (+) True G68690
CI01000012_00502185_00516358.mRNA mRNA upstream 18658 500151 ~ 516908 (+) True CI01000012_00502185_00516358
CI01000012_00318129_00318595.mRNA mRNA upstream 216148 318129 ~ 319418 (+) True CI01000012_00318129_00318595
CI01000012_00194370_00195347.mRNA mRNA upstream 339890 193903 ~ 195676 (+) False CI01000012_00194370_00195347
CI01000012_00030966_00032941.mRNA mRNA upstream 502511 28818 ~ 33055 (+) True CI01000012_00030966_00032941
CI01000012_00593086_00594741.mRNA mRNA downstream 56173 592126 ~ 595465 (+) True CI01000012_00593086_00594741
CI01000012_00644021_00646785.mRNA mRNA downstream 108068 644021 ~ 647075 (+) True CI01000012_00644021_00646785
CI01000012_00886127_00889703.mRNA mRNA downstream 349167 885120 ~ 890337 (+) True CI01000012_00886127_00889703
CI01000012_00979848_00986445.mRNA mRNA downstream 443895 979848 ~ 986745 (+) True CI01000012_00979848_00986445
CI01000012_00991831_01027918.mRNA mRNA downstream 455222 991175 ~ 1028035 (+) True CI01000012_00991831_01027918
TU77769 other upstream 329792 192246 ~ 205774 (+) True G68264
TU77788 other upstream 475034 26390 ~ 60532 (+) True G68282
TU78303 other downstream 147570 683523 ~ 684578 (+) False G68725
TU78307 other downstream 147570 683523 ~ 684696 (+) False G68725
TU78309 other downstream 147570 683523 ~ 684856 (+) False G68725
TU78310 other downstream 147570 683523 ~ 684788 (+) True G68725
TU78809 other downstream 1156742 1697400 ~ 1698236 (+) True CI01000012_01698932_01719811

Expression Profile