RNA id: TU78296


Basic Information

Item Value
RNA id TU78296
length 266
lncRNA type inter_gene
GC content 0.33
exon number 1
gene id G68719
representative True

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 659203 ~ 659468 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GAAAAATCTAAGATAACGATAGTAAATTATGGAGTGCCACAAGGATCTGTGTTAGGCCCTCTGTTATTTTCAATATATATGCTGCCACTTGGTGATATTATAAGAAAACATGGAATTAGTTTCCACTGCTATGCCGATGATACTCAGTTATATATTTCATCACGACCAGATGAAATCTCCAAATTATCCAATCTGACAGAGTGTGTTAAAGAAGTAAAACATTGGATGAGTAATTTTCTTCTATTAAATTCAGATAAGACTGAAGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU78274 lncRNA upstream 24589 634409 ~ 634614 (+) True G68699
TU78269 lncRNA upstream 27008 631982 ~ 632195 (+) True G68694
TU78263 lncRNA upstream 31585 627183 ~ 627618 (+) False G68690
TU78264 lncRNA upstream 31585 627329 ~ 627618 (+) True G68690
TU78220 lncRNA upstream 70783 588037 ~ 588420 (+) True G68653
TU78271 lncRNA downstream 17527 676995 ~ 678472 (+) True G68696
TU78311 lncRNA downstream 26180 685648 ~ 686150 (+) True G68726
TU78316 lncRNA downstream 30580 690048 ~ 691318 (+) True G68731
TU78325 lncRNA downstream 44409 703877 ~ 705039 (+) True G68740
TU78335 lncRNA downstream 73380 732848 ~ 733205 (+) True G68750
CI01000012_00644021_00646785.mRNA mRNA upstream 12128 644021 ~ 647075 (+) True CI01000012_00644021_00646785
CI01000012_00593086_00594741.mRNA mRNA upstream 63738 592126 ~ 595465 (+) True CI01000012_00593086_00594741
CI01000012_00502185_00516358.mRNA mRNA upstream 142295 500151 ~ 516908 (+) True CI01000012_00502185_00516358
CI01000012_00318129_00318595.mRNA mRNA upstream 339785 318129 ~ 319418 (+) True CI01000012_00318129_00318595
CI01000012_00194370_00195347.mRNA mRNA upstream 463527 193903 ~ 195676 (+) False CI01000012_00194370_00195347
CI01000012_00886127_00889703.mRNA mRNA downstream 225652 885120 ~ 890337 (+) True CI01000012_00886127_00889703
CI01000012_00979848_00986445.mRNA mRNA downstream 320380 979848 ~ 986745 (+) True CI01000012_00979848_00986445
CI01000012_00991831_01027918.mRNA mRNA downstream 331707 991175 ~ 1028035 (+) True CI01000012_00991831_01027918
CI01000012_01054663_01055748.mRNA mRNA downstream 395195 1054663 ~ 1058353 (+) True CI01000012_01054663_01055748
CI01000012_01060250_01062758.mRNA mRNA downstream 400717 1060185 ~ 1062758 (+) True CI01000012_01060250_01062758
TU78227 other upstream 123250 535566 ~ 535953 (+) True G68660
TU77769 other upstream 453429 192246 ~ 205774 (+) True G68264
TU77788 other upstream 598671 26390 ~ 60532 (+) True G68282
TU78303 other downstream 24055 683523 ~ 684578 (+) False G68725
TU78307 other downstream 24055 683523 ~ 684696 (+) False G68725
TU78309 other downstream 24055 683523 ~ 684856 (+) False G68725
TU78310 other downstream 24055 683523 ~ 684788 (+) True G68725
TU78809 other downstream 1033227 1697400 ~ 1698236 (+) True CI01000012_01698932_01719811

Expression Profile