RNA id: TU78939


Basic Information

Item Value
RNA id TU78939
length 505
lncRNA type inter_gene
GC content 0.52
exon number 1
gene id G69224
representative True

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 661759 ~ 662263 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTCCCTCAGATCCTTCTTCTTCCTAGAGTCTCGCCTTCTCTGTGTCCTATTCCTCCATGGAGGGGCCGTGCGAGAGGCGACACTAGCCTTCTGGCCCTGTCTATGGCCCTCGGGTCGGGACGGGCCAGGCCCAGTCTGTCTGGTTGAGGACTCAGACCTTTCTGGACTTTCCCACCACAGCCTCGACGGAGGTACCGAAAAATTCAGAGGGTGAAACCGGCACATCAAGGAGAAAGCCTTTGGTCTAAGACCCTCAGACCCGCTGCCGCGTATGCCCTGCCATTTAAGCGAGATGTCACTTTAAGGGGCTTAGATGGCAGAGTCGGAGCTTACAGTGTCGATGTCCGCCCAGAAAATGAGATGGTTAGCAAACCCTCTCATCAATCGGTGGCATTGACACATACCCATATTCCTTCCACAAACTCTACACAGGGAACAGTGGTCTACAAAGAAAATACTTCAGTATTATATAGTAACACAGACCTTAAACAGTTCAACCTGCGGC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU78938 lncRNA downstream 2297 659177 ~ 659462 (-) True G69223
TU78937 lncRNA downstream 3551 657967 ~ 658208 (-) True G69222
TU78907 lncRNA downstream 34074 627342 ~ 627685 (-) True G69193
TU78904 lncRNA downstream 34113 627342 ~ 627646 (-) False G69193
TU78863 lncRNA downstream 78525 582794 ~ 583234 (-) True G69157
TU78890 lncRNA upstream 5733 667996 ~ 668238 (-) True G69180
TU78955 lncRNA upstream 14745 677008 ~ 677714 (-) True G69235
TU78952 lncRNA upstream 15656 677919 ~ 678475 (-) False G69234
TU78953 lncRNA upstream 15993 678256 ~ 678475 (-) True G69234
TU78960 lncRNA upstream 23313 685576 ~ 686162 (-) True G69237
CI01000012_00647774_00648451.mRNA mRNA downstream 12814 647586 ~ 648945 (-) True CI01000012_00647774_00648451
CI01000012_00520655_00552630.mRNA mRNA downstream 107939 520139 ~ 553820 (-) True CI01000012_00520655_00552630
CI01000012_00427641_00472235.mRNA mRNA downstream 189182 427573 ~ 472577 (-) True CI01000012_00427641_00472235
CI01000012_00382850_00384215.mRNA mRNA downstream 277333 381711 ~ 384426 (-) True CI01000012_00382850_00384215
CI01000012_00340814_00363240.mRNA mRNA downstream 298519 340665 ~ 363240 (-) True CI01000012_00340814_00363240
CI01000012_00686760_00686993.mRNA mRNA upstream 24258 686521 ~ 686993 (-) True CI01000012_00686760_00686993
CI01000012_00689933_00695237.mRNA mRNA upstream 26831 689094 ~ 695264 (-) True CI01000012_00689933_00695237
CI01000012_00863269_00864644.mRNA mRNA upstream 199777 862040 ~ 865072 (-) True CI01000012_00863269_00864644
CI01000012_00866804_00867133.mRNA mRNA upstream 203722 865985 ~ 867133 (-) True CI01000012_00866804_00867133
CI01000012_00904582_00908136.mRNA mRNA upstream 242188 904451 ~ 909518 (-) True CI01000012_00904582_00908136
TU78867 other downstream 73744 587604 ~ 588015 (-) True G69161
TU78856 other downstream 94803 565463 ~ 566956 (-) True G69150
TU78086 other downstream 481797 179563 ~ 179962 (-) True CI01000012_00178282_00181473
TU79003 other upstream 67657 729920 ~ 730465 (-) True G69277
TU79074 other upstream 113101 775364 ~ 775746 (-) False G69332
TU79075 other upstream 113101 775364 ~ 775879 (-) False G69332
TU79072 other upstream 113147 775410 ~ 775879 (-) True G69332
TU79046 other upstream 473413 1135676 ~ 1151198 (-) True CI01000012_01139864_01192154

Expression Profile