RNA id: TU78952


Basic Information

Item Value
RNA id TU78952
length 557
lncRNA type inter_gene
GC content 0.32
exon number 1
gene id G69234
representative False

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 677919 ~ 678475 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTCAGGGGGATTTTAATTTTGAGTGATACGTGGTGTTTTAATCATGTAGACAGACATGGTATATGTTAAACAGAAAAGAAGGGACAAACAGAAAAGATTAGAATTGTAGCAATGGCCAAAGTCAACAAAACTCAAACACTACAGTGCTGTTAACACCTGCCTTGTACATATAACCATATGAAAACCAAACAGGAAAACATTTACACATTAGTTAAGGGCTTACTTTTTGAAAAAAAAAAAAAAAAAAAATCATGGCAATTTTCAATAAAGGTACAAAGGATCACTAATGTTCATTTACATTTATACAAGATAACATTAACTGGCTACATACAAAGTTATGAACTCATTGTTCATCATCTTTTTTGAAGAAAGTACAACCTGAAAATCATTTGCATCTGTCAGAAATATAGTGAAGGAAAGGGTCTAGAATACGATATAATGTTTATCACCATAAAATACGAACAAGGATGATCTATAAACAACTAAAACTGGAAAGATGAGAGTTTTGGATGGCACAGGTGAGGAACCCTGCATCTTCATGCCTTTAAGACTTCTCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU78955 lncRNA downstream 205 677008 ~ 677714 (-) True G69235
TU78890 lncRNA downstream 9681 667996 ~ 668238 (-) True G69180
TU78939 lncRNA downstream 15656 661759 ~ 662263 (-) True G69224
TU78938 lncRNA downstream 18457 659177 ~ 659462 (-) True G69223
TU78937 lncRNA downstream 19711 657967 ~ 658208 (-) True G69222
TU78960 lncRNA upstream 7101 685576 ~ 686162 (-) True G69237
TU78988 lncRNA upstream 38518 716993 ~ 717311 (-) True G69262
TU78989 lncRNA upstream 39455 717930 ~ 718195 (-) True G69263
TU78990 lncRNA upstream 40016 718491 ~ 718767 (-) True G69264
TU78991 lncRNA upstream 40419 718894 ~ 719184 (-) True G69265
CI01000012_00647774_00648451.mRNA mRNA downstream 28974 647586 ~ 648945 (-) True CI01000012_00647774_00648451
CI01000012_00520655_00552630.mRNA mRNA downstream 124099 520139 ~ 553820 (-) True CI01000012_00520655_00552630
CI01000012_00427641_00472235.mRNA mRNA downstream 205342 427573 ~ 472577 (-) True CI01000012_00427641_00472235
CI01000012_00382850_00384215.mRNA mRNA downstream 293493 381711 ~ 384426 (-) True CI01000012_00382850_00384215
CI01000012_00340814_00363240.mRNA mRNA downstream 314679 340665 ~ 363240 (-) True CI01000012_00340814_00363240
CI01000012_00686760_00686993.mRNA mRNA upstream 8046 686521 ~ 686993 (-) True CI01000012_00686760_00686993
CI01000012_00689933_00695237.mRNA mRNA upstream 10619 689094 ~ 695264 (-) True CI01000012_00689933_00695237
CI01000012_00863269_00864644.mRNA mRNA upstream 183565 862040 ~ 865072 (-) True CI01000012_00863269_00864644
CI01000012_00866804_00867133.mRNA mRNA upstream 187510 865985 ~ 867133 (-) True CI01000012_00866804_00867133
CI01000012_00904582_00908136.mRNA mRNA upstream 225976 904451 ~ 909518 (-) True CI01000012_00904582_00908136
TU78867 other downstream 89904 587604 ~ 588015 (-) True G69161
TU78856 other downstream 110963 565463 ~ 566956 (-) True G69150
TU78086 other downstream 497957 179563 ~ 179962 (-) True CI01000012_00178282_00181473
TU79003 other upstream 51445 729920 ~ 730465 (-) True G69277
TU79074 other upstream 96889 775364 ~ 775746 (-) False G69332
TU79075 other upstream 96889 775364 ~ 775879 (-) False G69332
TU79072 other upstream 96935 775410 ~ 775879 (-) True G69332
TU79046 other upstream 457201 1135676 ~ 1151198 (-) True CI01000012_01139864_01192154

Expression Profile