Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU78310 |
| length | 789 |
| RNA type | TUCP |
| GC content | 0.37 |
| exon number | 4 |
| gene id | G68725 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000012 |
| NCBI id | null |
| chromosome length | 13770000 |
| location | 683523 ~ 684856 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU78271 | lncRNA | upstream | 5051 | 676995 ~ 678472 (+) | True | G68696 |
| TU78296 | lncRNA | upstream | 24055 | 659203 ~ 659468 (+) | True | G68719 |
| TU78274 | lncRNA | upstream | 48909 | 634409 ~ 634614 (+) | True | G68699 |
| TU78269 | lncRNA | upstream | 51328 | 631982 ~ 632195 (+) | True | G68694 |
| TU78264 | lncRNA | upstream | 55905 | 627329 ~ 627618 (+) | True | G68690 |
| TU78311 | lncRNA | downstream | 860 | 685648 ~ 686150 (+) | True | G68726 |
| TU78316 | lncRNA | downstream | 5260 | 690048 ~ 691318 (+) | True | G68731 |
| TU78325 | lncRNA | downstream | 19089 | 703877 ~ 705039 (+) | True | G68740 |
| TU78335 | lncRNA | downstream | 48060 | 732848 ~ 733205 (+) | True | G68750 |
| TU78338 | lncRNA | downstream | 58414 | 743202 ~ 743914 (+) | True | G68753 |
| CI01000012_00644021_00646785.mRNA | mRNA | upstream | 36448 | 644021 ~ 647075 (+) | True | CI01000012_00644021_00646785 |
| CI01000012_00593086_00594741.mRNA | mRNA | upstream | 88058 | 592126 ~ 595465 (+) | True | CI01000012_00593086_00594741 |
| CI01000012_00502185_00516358.mRNA | mRNA | upstream | 166615 | 500151 ~ 516908 (+) | True | CI01000012_00502185_00516358 |
| CI01000012_00318129_00318595.mRNA | mRNA | upstream | 364105 | 318129 ~ 319418 (+) | True | CI01000012_00318129_00318595 |
| CI01000012_00194370_00195347.mRNA | mRNA | upstream | 487847 | 193903 ~ 195676 (+) | False | CI01000012_00194370_00195347 |
| CI01000012_00886127_00889703.mRNA | mRNA | downstream | 200332 | 885120 ~ 890337 (+) | True | CI01000012_00886127_00889703 |
| CI01000012_00979848_00986445.mRNA | mRNA | downstream | 295060 | 979848 ~ 986745 (+) | True | CI01000012_00979848_00986445 |
| CI01000012_00991831_01027918.mRNA | mRNA | downstream | 306387 | 991175 ~ 1028035 (+) | True | CI01000012_00991831_01027918 |
| CI01000012_01054663_01055748.mRNA | mRNA | downstream | 369875 | 1054663 ~ 1058353 (+) | True | CI01000012_01054663_01055748 |
| CI01000012_01060250_01062758.mRNA | mRNA | downstream | 375397 | 1060185 ~ 1062758 (+) | True | CI01000012_01060250_01062758 |
| TU78227 | other | upstream | 147570 | 535566 ~ 535953 (+) | True | G68660 |
| TU77769 | other | upstream | 477749 | 192246 ~ 205774 (+) | True | G68264 |
| TU77788 | other | upstream | 622991 | 26390 ~ 60532 (+) | True | G68282 |
| TU78809 | other | downstream | 1007907 | 1697400 ~ 1698236 (+) | True | CI01000012_01698932_01719811 |
| TU79850 | other | downstream | 1937690 | 2622478 ~ 2631385 (+) | True | G70029 |
| TU81174 | other | downstream | 3735451 | 4420239 ~ 4420494 (+) | True | G71194 |
| TU81162 | other | downstream | 3813665 | 4498453 ~ 4500089 (+) | True | CI01000012_04495631_04501066 |
| TU81129 | other | downstream | 4492107 | 5176895 ~ 5180970 (+) | False | CI01000012_05177587_05180517 |
