RNA id: TU78311


Basic Information

Item Value
RNA id TU78311
length 503
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G68726
representative True

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 685648 ~ 686150 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AAGTTCTTTAAAGTATGTTCTTTTGTGCACTCAATACTTGATCGGCAGGACATATTACAGCAAATGACTTGCTCCTAGCACAAATTACTGCATCAGTGAAGTGTGGCATGGAAGTGATCAGCCTGTGGCACTGCTGAGGCACTATTGAGCCTTCAGATCATCTGTATATTGTTGGATCGACTGTTTCTCATCTTTCTCTTGAAAATATCCCATAGATTCAGGTCAGGCATATTGGCTGGCCAATAAAGCACAGTAATATCATGCTCAGCAAACCACTTGGAAGTGGTTTTTGCACTGTGTGCAGGTGCTAAAGTCCTGCTGGAAAAGGAAATCAGCATCTCCATAAAGCTTGTCAGCAGATGGAAACATAAAGTGCTCCAAAATCTCCTGGAAGATGGCTGCATTGACTTTGCACTTGATAAAACACAATGGACCAACACCAGCAGACGTCACGGCCCCCCCAAATCATTATTGACTTCAGAAACTTCACACTAGACTTCAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU78271 lncRNA upstream 7176 676995 ~ 678472 (+) True G68696
TU78296 lncRNA upstream 26180 659203 ~ 659468 (+) True G68719
TU78274 lncRNA upstream 51034 634409 ~ 634614 (+) True G68699
TU78269 lncRNA upstream 53453 631982 ~ 632195 (+) True G68694
TU78263 lncRNA upstream 58030 627183 ~ 627618 (+) False G68690
TU78316 lncRNA downstream 3898 690048 ~ 691318 (+) True G68731
TU78325 lncRNA downstream 17727 703877 ~ 705039 (+) True G68740
TU78335 lncRNA downstream 46698 732848 ~ 733205 (+) True G68750
TU78338 lncRNA downstream 57052 743202 ~ 743914 (+) True G68753
TU78353 lncRNA downstream 79470 765620 ~ 766677 (+) False G68765
CI01000012_00644021_00646785.mRNA mRNA upstream 38573 644021 ~ 647075 (+) True CI01000012_00644021_00646785
CI01000012_00593086_00594741.mRNA mRNA upstream 90183 592126 ~ 595465 (+) True CI01000012_00593086_00594741
CI01000012_00502185_00516358.mRNA mRNA upstream 168740 500151 ~ 516908 (+) True CI01000012_00502185_00516358
CI01000012_00318129_00318595.mRNA mRNA upstream 366230 318129 ~ 319418 (+) True CI01000012_00318129_00318595
CI01000012_00194370_00195347.mRNA mRNA upstream 489972 193903 ~ 195676 (+) False CI01000012_00194370_00195347
CI01000012_00886127_00889703.mRNA mRNA downstream 198970 885120 ~ 890337 (+) True CI01000012_00886127_00889703
CI01000012_00979848_00986445.mRNA mRNA downstream 293698 979848 ~ 986745 (+) True CI01000012_00979848_00986445
CI01000012_00991831_01027918.mRNA mRNA downstream 305025 991175 ~ 1028035 (+) True CI01000012_00991831_01027918
CI01000012_01054663_01055748.mRNA mRNA downstream 368513 1054663 ~ 1058353 (+) True CI01000012_01054663_01055748
CI01000012_01060250_01062758.mRNA mRNA downstream 374035 1060185 ~ 1062758 (+) True CI01000012_01060250_01062758
TU78309 other upstream 792 683523 ~ 684856 (+) False G68725
TU78310 other upstream 860 683523 ~ 684788 (+) True G68725
TU78307 other upstream 952 683523 ~ 684696 (+) False G68725
TU78303 other upstream 1070 683523 ~ 684578 (+) False G68725
TU78227 other upstream 149695 535566 ~ 535953 (+) True G68660
TU78809 other downstream 1006545 1697400 ~ 1698236 (+) True CI01000012_01698932_01719811
TU79850 other downstream 1936328 2622478 ~ 2631385 (+) True G70029
TU81174 other downstream 3734089 4420239 ~ 4420494 (+) True G71194
TU81162 other downstream 3812303 4498453 ~ 4500089 (+) True CI01000012_04495631_04501066
TU81129 other downstream 4490745 5176895 ~ 5180970 (+) False CI01000012_05177587_05180517

Expression Profile