RNA id: TU78338


Basic Information

Item Value
RNA id TU78338
length 713
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G68753
representative True

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 743202 ~ 743914 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CGGACTCCGTCTCCCATGATCCTCCCTGTTCCACACCTGTACTGAACCCTAGAGAATGGGAGCTAAACCAAGCTAACACCGTAACCTCAAGCTTGAATGCTAATTCAAGGGGCTCAGGGGAAATACAAATTCAGTATGAATGAAGTTCTAGAAAAGTGGGGCCTAAGCAACATAGCATACACTTATCTAAACAAAGATAAGGGCCTACCACCTGAGACAACGGCACCAGGGAGGCTAGTGACAGCCTACTACCTTAGCTGCTATCTAACTAGCACCTACACCAAAAGGGTAATGGGCATTTGGCCTGACAACTCAAATAAGAGGAGGCCAGAACTAGAAACTATACAACCTGACAAGGGATAGTAGCAATAAAGGGTGAATGCTTTAGTAAATCACCTAAACCCTAGTTCTAGCCTAGGCCGGCTAAGCTGTGGGCTCAACCAGAGAAGAGGAAACTTAAGTAAAGCAAAGCTCAACAGGCAAACAATGTCAGGTGGCCCAGGAGGCCGACACTAGACATTAGATCTATCTGAAGTAAAGAGTGATAACTCAAACATACTCTAGCTAAAACCAGAGGAGAAGCTACTCTACCAAACGTGGCTGAGAGGCGGCCATTTTGTGGCCAACACAGTACAAATAAATCATTCCAGCCAACCTAATGGAACTTCAGTGCCCAAAAACCCCTATCTTTTTCCATCTACATGCTCAGGAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU78335 lncRNA upstream 9997 732848 ~ 733205 (+) True G68750
TU78325 lncRNA upstream 38163 703877 ~ 705039 (+) True G68740
TU78316 lncRNA upstream 51884 690048 ~ 691318 (+) True G68731
TU78311 lncRNA upstream 57052 685648 ~ 686150 (+) True G68726
TU78271 lncRNA upstream 64730 676995 ~ 678472 (+) True G68696
TU78353 lncRNA downstream 21706 765620 ~ 766677 (+) False G68765
TU78354 lncRNA downstream 21706 765620 ~ 766538 (+) True G68765
TU78375 lncRNA downstream 31266 775180 ~ 775755 (+) False G68771
TU78376 lncRNA downstream 31266 775180 ~ 775723 (+) False G68771
TU78368 lncRNA downstream 31514 775428 ~ 775815 (+) False G68771
CI01000012_00644021_00646785.mRNA mRNA upstream 96127 644021 ~ 647075 (+) True CI01000012_00644021_00646785
CI01000012_00593086_00594741.mRNA mRNA upstream 147737 592126 ~ 595465 (+) True CI01000012_00593086_00594741
CI01000012_00502185_00516358.mRNA mRNA upstream 226294 500151 ~ 516908 (+) True CI01000012_00502185_00516358
CI01000012_00318129_00318595.mRNA mRNA upstream 423784 318129 ~ 319418 (+) True CI01000012_00318129_00318595
CI01000012_00194370_00195347.mRNA mRNA upstream 547526 193903 ~ 195676 (+) False CI01000012_00194370_00195347
CI01000012_00886127_00889703.mRNA mRNA downstream 141206 885120 ~ 890337 (+) True CI01000012_00886127_00889703
CI01000012_00979848_00986445.mRNA mRNA downstream 235934 979848 ~ 986745 (+) True CI01000012_00979848_00986445
CI01000012_00991831_01027918.mRNA mRNA downstream 247261 991175 ~ 1028035 (+) True CI01000012_00991831_01027918
CI01000012_01054663_01055748.mRNA mRNA downstream 310749 1054663 ~ 1058353 (+) True CI01000012_01054663_01055748
CI01000012_01060250_01062758.mRNA mRNA downstream 316271 1060185 ~ 1062758 (+) True CI01000012_01060250_01062758
TU78309 other upstream 58346 683523 ~ 684856 (+) False G68725
TU78310 other upstream 58414 683523 ~ 684788 (+) True G68725
TU78307 other upstream 58506 683523 ~ 684696 (+) False G68725
TU78303 other upstream 58624 683523 ~ 684578 (+) False G68725
TU78227 other upstream 207249 535566 ~ 535953 (+) True G68660
TU78809 other downstream 948781 1697400 ~ 1698236 (+) True CI01000012_01698932_01719811
TU79850 other downstream 1878564 2622478 ~ 2631385 (+) True G70029
TU81174 other downstream 3676325 4420239 ~ 4420494 (+) True G71194
TU81162 other downstream 3754539 4498453 ~ 4500089 (+) True CI01000012_04495631_04501066
TU81129 other downstream 4432981 5176895 ~ 5180970 (+) False CI01000012_05177587_05180517

Expression Profile