RNA id: TU79027


Basic Information

Item Value
RNA id TU79027
length 224
lncRNA type inter_gene
GC content 0.65
exon number 1
gene id G69297
representative True

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 756806 ~ 757029 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ACTCCTCCACCTGCGCTCCTTCCTCCCTCGATGTCTGCTGGGACCTACGAGCTTTCGGCTTCGCGGAGCTTCCTTGGACCGTCAGCTTCACCCGGGTTGGATGTCGCTTCACCTGTGCAATGGACTTGCAGGCCGTTCGTTGCTCTCCGGCCCTCCACCCCTACTGCTCCGGCTAGCTCCGCCCTCCCTCAGGCTCCGCCTCCGCCCTCGGTCGCTCCAGCTAC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU79023 lncRNA downstream 4346 751714 ~ 752460 (-) True G69293
TU79021 lncRNA downstream 5809 750698 ~ 750997 (-) True G69291
TU78991 lncRNA downstream 37622 718894 ~ 719184 (-) True G69265
TU78990 lncRNA downstream 38039 718491 ~ 718767 (-) True G69264
TU78989 lncRNA downstream 38611 717930 ~ 718195 (-) True G69263
TU79037 lncRNA upstream 12630 769659 ~ 769909 (-) True G69305
TU79070 lncRNA upstream 18381 775410 ~ 775746 (-) False G69332
TU79079 lncRNA upstream 22617 779646 ~ 779875 (-) True G69334
TU79086 lncRNA upstream 30467 787496 ~ 787717 (-) True G69341
TU79087 lncRNA upstream 32024 789053 ~ 789400 (-) True G69342
CI01000012_00689933_00695237.mRNA mRNA downstream 61542 689094 ~ 695264 (-) True CI01000012_00689933_00695237
CI01000012_00686760_00686993.mRNA mRNA downstream 69813 686521 ~ 686993 (-) True CI01000012_00686760_00686993
CI01000012_00647774_00648451.mRNA mRNA downstream 107861 647586 ~ 648945 (-) True CI01000012_00647774_00648451
CI01000012_00520655_00552630.mRNA mRNA downstream 202986 520139 ~ 553820 (-) True CI01000012_00520655_00552630
CI01000012_00427641_00472235.mRNA mRNA downstream 284229 427573 ~ 472577 (-) True CI01000012_00427641_00472235
CI01000012_00863269_00864644.mRNA mRNA upstream 105011 862040 ~ 865072 (-) True CI01000012_00863269_00864644
CI01000012_00866804_00867133.mRNA mRNA upstream 108956 865985 ~ 867133 (-) True CI01000012_00866804_00867133
CI01000012_00904582_00908136.mRNA mRNA upstream 147422 904451 ~ 909518 (-) True CI01000012_00904582_00908136
CI01000012_00955355_00975846.mRNA mRNA upstream 198326 955355 ~ 975880 (-) True CI01000012_00955355_00975846
CI01000012_01032204_01034843.mRNA mRNA upstream 274940 1031969 ~ 1034843 (-) True CI01000012_01032204_01034843
TU79003 other downstream 26341 729920 ~ 730465 (-) True G69277
TU78867 other downstream 168791 587604 ~ 588015 (-) True G69161
TU78856 other downstream 189850 565463 ~ 566956 (-) True G69150
TU78086 other downstream 576844 179563 ~ 179962 (-) True CI01000012_00178282_00181473
TU79074 other upstream 18335 775364 ~ 775746 (-) False G69332
TU79075 other upstream 18335 775364 ~ 775879 (-) False G69332
TU79072 other upstream 18381 775410 ~ 775879 (-) True G69332
TU79046 other upstream 378647 1135676 ~ 1151198 (-) True CI01000012_01139864_01192154
TU79336 other upstream 575046 1332075 ~ 1332901 (-) False G69562

Expression Profile