RNA id: TU79070


Basic Information

Item Value
RNA id TU79070
length 337
lncRNA type inter_gene
GC content 0.49
exon number 1
gene id G69332
representative False

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 775364 ~ 775879 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGTTGTAGAAAGTCAACCATCACTGCAGCCCTCCACCAGTCTGGGCTTTATGGCAGAGTGGCCCGACGGAAGCCTCTCCTCAGTGCAAGACACATGAAAAAACACCTGAAGGACTCCAAGATGGTGAGAAATAAGATTCTCTGGTCTGATGAGACCAAGATAGAACTTTTTGGCCTTAATTCTAAGTGGTATGTGTGGAGAAAACCAGGCACTGCTCATCACCTGTCCAATACAGTCCCAACAGTGAAGCATGGTGGTGGCAGCATCATGCTGTGGGGGTGTTTTTCAGCTGCAGGGACAGGACGACTGGTTGCAATCAAGGGAAAGATGAATGCGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU79037 lncRNA downstream 5501 769659 ~ 769909 (-) True G69305
TU79027 lncRNA downstream 18381 756806 ~ 757029 (-) True G69297
TU79023 lncRNA downstream 22950 751714 ~ 752460 (-) True G69293
TU79021 lncRNA downstream 24413 750698 ~ 750997 (-) True G69291
TU78991 lncRNA downstream 56226 718894 ~ 719184 (-) True G69265
TU79079 lncRNA upstream 3900 779646 ~ 779875 (-) True G69334
TU79086 lncRNA upstream 11750 787496 ~ 787717 (-) True G69341
TU79087 lncRNA upstream 13307 789053 ~ 789400 (-) True G69342
TU79102 lncRNA upstream 27173 802919 ~ 803140 (-) True G69357
TU79106 lncRNA upstream 30764 806510 ~ 806787 (-) True G69360
CI01000012_00689933_00695237.mRNA mRNA downstream 80146 689094 ~ 695264 (-) True CI01000012_00689933_00695237
CI01000012_00686760_00686993.mRNA mRNA downstream 88417 686521 ~ 686993 (-) True CI01000012_00686760_00686993
CI01000012_00647774_00648451.mRNA mRNA downstream 126465 647586 ~ 648945 (-) True CI01000012_00647774_00648451
CI01000012_00520655_00552630.mRNA mRNA downstream 221590 520139 ~ 553820 (-) True CI01000012_00520655_00552630
CI01000012_00427641_00472235.mRNA mRNA downstream 302833 427573 ~ 472577 (-) True CI01000012_00427641_00472235
CI01000012_00863269_00864644.mRNA mRNA upstream 86294 862040 ~ 865072 (-) True CI01000012_00863269_00864644
CI01000012_00866804_00867133.mRNA mRNA upstream 90239 865985 ~ 867133 (-) True CI01000012_00866804_00867133
CI01000012_00904582_00908136.mRNA mRNA upstream 128705 904451 ~ 909518 (-) True CI01000012_00904582_00908136
CI01000012_00955355_00975846.mRNA mRNA upstream 179609 955355 ~ 975880 (-) True CI01000012_00955355_00975846
CI01000012_01032204_01034843.mRNA mRNA upstream 256223 1031969 ~ 1034843 (-) True CI01000012_01032204_01034843
TU79003 other downstream 44945 729920 ~ 730465 (-) True G69277
TU78867 other downstream 187395 587604 ~ 588015 (-) True G69161
TU78856 other downstream 208454 565463 ~ 566956 (-) True G69150
TU78086 other downstream 595448 179563 ~ 179962 (-) True CI01000012_00178282_00181473
TU79046 other upstream 359930 1135676 ~ 1151198 (-) True CI01000012_01139864_01192154
TU79336 other upstream 556329 1332075 ~ 1332901 (-) False G69562
TU79337 other upstream 556329 1332075 ~ 1376298 (-) True G69562
TU80715 other upstream 2090762 2866508 ~ 2866892 (-) True G70774
TU81962 other upstream 3757784 4533530 ~ 4534672 (-) True G71898

Expression Profile