RNA id: TU79336


Basic Information

Item Value
RNA id TU79336
length 718
RNA type TUCP
GC content 0.45
exon number 2
gene id G69562
representative False

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 1332075 ~ 1376298 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TGGAAATGCGAAAATCCAAATTTCAAAATTTAAGCCTTTTCTAAAATGTGCCCATGTTCTTGATGAACTGACCTGTTTTTGCGATTATTCCCCAAGCCACAATCTTGCCCACTTCAGATAAAGAGCTAAACTGCTATAAGAGCTGCTTTCTCAATATCTGACAGACTGTAATATTACAGCTCCATCTAGTGGCAGTCTGCAAAACATCATTTCTAAATAAGGAGAATATTTTGGTATTCGGTGCTTGACTGAAATGAAATGATTGTCCAGTTTGCTCATTATTATTATTATAGGCTAAACTGACTCTAGAGCAGAAACACTCCTGGCTCTCACCTTGGTCTGAAAGCAGCAGTAGAGTTGGGTAAGGTAAGGGTGTTTTCTGGCCAGGGCTAGAATGCGTTTCTCAGTCATAGTGCAGTCCACATCATCATCCTGTAGGATGACGTCTTTCTTCAACACTTTCACCGCAAAAACCTCATCAGTGCCTCTTAACTCAGCCAGCATCACCTTGCCGAAGCTGCCTTTCCCGAGCACTTTGATGAAGGAGAAGTCTTCCAGCGTCATCCTTTTGGTCTGGAGGGTCTTCACCTCTCCATTCTCTCTCGCCTCCCCCGTCTCCTCTGACCCTCCCTCAGTTAGAGAGGAGGACGAGGCTGGCTTTAGCTCTTCACCACGATGGTCAAACGAAAGTGCCTTCCTGATGTTCTCCAGGTCCTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU79290 lncRNA downstream 1567 1324916 ~ 1330508 (-) True G69517
TU79282 lncRNA downstream 114319 1217451 ~ 1217756 (-) True G69509
TU79281 lncRNA downstream 115403 1216436 ~ 1216672 (-) True G69508
TU79271 lncRNA downstream 126662 1205175 ~ 1205413 (-) True G69498
TU79270 lncRNA downstream 127536 1204309 ~ 1204539 (-) True G69497
TU79348 lncRNA upstream 6286 1339187 ~ 1339742 (-) True G69572
TU79422 lncRNA upstream 171647 1504548 ~ 1504754 (-) True G69641
TU79429 lncRNA upstream 187192 1520093 ~ 1520388 (-) True G69647
TU79488 lncRNA upstream 261952 1594853 ~ 1595294 (-) True G69696
TU79492 lncRNA upstream 265027 1597928 ~ 1598157 (-) True G69700
CI01000012_01256938_01257273.mRNA mRNA downstream 74802 1255717 ~ 1257273 (-) True CI01000012_01256938_01257273
CI01000012_01240945_01242653.mRNA mRNA downstream 89422 1240517 ~ 1242653 (-) True CI01000012_01240945_01242653
CI01000012_01203854_01208893.mRNA mRNA downstream 123182 1203452 ~ 1208893 (-) True CI01000012_01203854_01208893
CI01000012_01139864_01192154.mRNA mRNA downstream 139921 1138753 ~ 1192154 (-) False CI01000012_01139864_01192154
CI01000012_01032204_01034843.mRNA mRNA downstream 297232 1031969 ~ 1034843 (-) True CI01000012_01032204_01034843
CI01000012_01489297_01490202.mRNA mRNA upstream 155929 1488830 ~ 1490313 (-) True CI01000012_01489297_01490202
CI01000012_01601665_01604244.mRNA mRNA upstream 268753 1601654 ~ 1604353 (-) True CI01000012_01601665_01604244
CI01000012_01677949_01691893.mRNA mRNA upstream 345003 1677904 ~ 1692036 (-) True CI01000012_01677949_01691893
CI01000012_02239088_02240850.mRNA mRNA upstream 905499 2238400 ~ 2240862 (-) True CI01000012_02239088_02240850
CI01000012_02251322_02337964.mRNA mRNA upstream 918236 2251137 ~ 2339368 (-) True CI01000012_02251322_02337964
TU79046 other downstream 180877 1135676 ~ 1151198 (-) True CI01000012_01139864_01192154
TU79075 other downstream 556196 775364 ~ 775879 (-) False G69332
TU79072 other downstream 556196 775410 ~ 775879 (-) True G69332
TU79074 other downstream 556329 775364 ~ 775746 (-) False G69332
TU79003 other downstream 601610 729920 ~ 730465 (-) True G69277
TU80715 other upstream 1533607 2866508 ~ 2866892 (-) True G70774
TU81962 other upstream 3200629 4533530 ~ 4534672 (-) True G71898
TU82190 other upstream 3443319 4776220 ~ 4776835 (-) False G72068
TU82191 other upstream 3443319 4776220 ~ 4780132 (-) True G72068
TU82349 other upstream 3960872 5293773 ~ 5302206 (-) True G72204

Expression Profile