RNA id: TU79513



Basic Information


Item Value
RNA id TU79513
length 300
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G69720
representative True

Chromosome Information


Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 1655480 ~ 1655779 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


TGGTCTGCTTACACACACAAAATCCTTTCTTGTCACACAATTTCTGAAACCTGACACTCAAACACCAGAACCACACACCAAATCTGAAAAACCATACACTAATTCTCGGCCTTCGATTCAGTTTTCAATTTCATAAAACACTTTTTGCAAAACACAACACACAGTTCTCTATGTAACACAAAAATCTAACAGGAAGTATCTTGATTTCATTTTTCAAACACAACCATTGTTTCTGTCCAACTACACATGGTTGATGTATTTTCTTTCTTTCGTACTGTGTAATACTGTATTCACAACCAC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU79492 lncRNA downstream 57323 1597928 ~ 1598157 (-) True G69700
TU79488 lncRNA downstream 60186 1594853 ~ 1595294 (-) True G69696
TU79429 lncRNA downstream 135092 1520093 ~ 1520388 (-) True G69647
TU79422 lncRNA downstream 150726 1504548 ~ 1504754 (-) True G69641
TU79348 lncRNA downstream 315738 1339187 ~ 1339742 (-) True G69572
TU79515 lncRNA upstream 1620 1657399 ~ 1657627 (-) True G69722
TU79519 lncRNA upstream 64226 1720005 ~ 1720265 (-) True G69726
TU79545 lncRNA upstream 114481 1770260 ~ 1786010 (-) True G69752
TU79552 lncRNA upstream 138252 1794031 ~ 1794263 (-) True G69759
TU79570 lncRNA upstream 154145 1809924 ~ 1810129 (-) True G69777
CI01000012_01601665_01604244.mRNA mRNA downstream 51127 1601654 ~ 1604353 (-) True CI01000012_01601665_01604244
CI01000012_01489297_01490202.mRNA mRNA downstream 165167 1488830 ~ 1490313 (-) True CI01000012_01489297_01490202
CI01000012_01256938_01257273.mRNA mRNA downstream 398207 1255717 ~ 1257273 (-) True CI01000012_01256938_01257273
CI01000012_01240945_01242653.mRNA mRNA downstream 412827 1240517 ~ 1242653 (-) True CI01000012_01240945_01242653
CI01000012_01203854_01208893.mRNA mRNA downstream 446587 1203452 ~ 1208893 (-) True CI01000012_01203854_01208893
CI01000012_01677949_01691893.mRNA mRNA upstream 22125 1677904 ~ 1692036 (-) True CI01000012_01677949_01691893
CI01000012_02239088_02240850.mRNA mRNA upstream 582621 2238400 ~ 2240862 (-) True CI01000012_02239088_02240850
CI01000012_02251322_02337964.mRNA mRNA upstream 595358 2251137 ~ 2339368 (-) True CI01000012_02251322_02337964
CI01000012_02357517_02361973.mRNA mRNA upstream 701345 2357124 ~ 2361973 (-) True CI01000012_02357517_02361973
CI01000012_02381631_02386668.mRNA mRNA upstream 725569 2381348 ~ 2386668 (-) True CI01000012_02381631_02386668
TU79337 other downstream 279182 1332075 ~ 1376298 (-) True G69562
TU79336 other downstream 322579 1332075 ~ 1332901 (-) False G69562
TU79046 other downstream 504282 1135676 ~ 1151198 (-) True CI01000012_01139864_01192154
TU79075 other downstream 879601 775364 ~ 775879 (-) False G69332
TU80715 other upstream 1210729 2866508 ~ 2866892 (-) True G70774
TU81962 other upstream 2877751 4533530 ~ 4534672 (-) True G71898
TU82190 other upstream 3120441 4776220 ~ 4776835 (-) False G72068
TU82191 other upstream 3120441 4776220 ~ 4780132 (-) True G72068
TU82349 other upstream 3637994 5293773 ~ 5302206 (-) True G72204

Expression Profile