RNA id: TU79552


Basic Information

Item Value
RNA id TU79552
length 233
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G69759
representative True

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 1794031 ~ 1794263 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CAAATACACTGTTTGGAAGTTAGTCGGGCCGATACCAACAACAAACGTCTAACCAATCAGCATTAGGGGGCATATGACGGTCGAGGAGAGAGAACGAGCAAGAGGGAGATTTAAAAAAAAAAAAAAAAAAAAAAAAAAACTGCAGAACGAGAAATGGGACACAATACAAAACAGCTCAAAAGAATATCACTGATATGAAGGTTTATGCCTGGGCAAGTGCTTTAGGACCCGCG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU79545 lncRNA downstream 8021 1770260 ~ 1786010 (-) True G69752
TU79519 lncRNA downstream 73766 1720005 ~ 1720265 (-) True G69726
TU79515 lncRNA downstream 136404 1657399 ~ 1657627 (-) True G69722
TU79513 lncRNA downstream 138252 1655480 ~ 1655779 (-) True G69720
TU79492 lncRNA downstream 195874 1597928 ~ 1598157 (-) True G69700
TU79570 lncRNA upstream 15661 1809924 ~ 1810129 (-) True G69777
TU79571 lncRNA upstream 22759 1817022 ~ 1817306 (-) True G69778
TU79572 lncRNA upstream 23770 1818033 ~ 1818488 (-) True G69779
TU79574 lncRNA upstream 34732 1828995 ~ 1829224 (-) True G69781
TU79593 lncRNA upstream 67388 1861651 ~ 1861988 (-) True G69800
CI01000012_01677949_01691893.mRNA mRNA downstream 101995 1677904 ~ 1692036 (-) True CI01000012_01677949_01691893
CI01000012_01601665_01604244.mRNA mRNA downstream 189678 1601654 ~ 1604353 (-) True CI01000012_01601665_01604244
CI01000012_01489297_01490202.mRNA mRNA downstream 303718 1488830 ~ 1490313 (-) True CI01000012_01489297_01490202
CI01000012_01256938_01257273.mRNA mRNA downstream 536758 1255717 ~ 1257273 (-) True CI01000012_01256938_01257273
CI01000012_01240945_01242653.mRNA mRNA downstream 551378 1240517 ~ 1242653 (-) True CI01000012_01240945_01242653
CI01000012_02239088_02240850.mRNA mRNA upstream 444137 2238400 ~ 2240862 (-) True CI01000012_02239088_02240850
CI01000012_02251322_02337964.mRNA mRNA upstream 456874 2251137 ~ 2339368 (-) True CI01000012_02251322_02337964
CI01000012_02357517_02361973.mRNA mRNA upstream 562861 2357124 ~ 2361973 (-) True CI01000012_02357517_02361973
CI01000012_02381631_02386668.mRNA mRNA upstream 587085 2381348 ~ 2386668 (-) True CI01000012_02381631_02386668
CI01000012_02395816_02404347.mRNA mRNA upstream 601294 2395557 ~ 2404347 (-) True CI01000012_02395816_02404347
TU79337 other downstream 417733 1332075 ~ 1376298 (-) True G69562
TU79336 other downstream 461130 1332075 ~ 1332901 (-) False G69562
TU79046 other downstream 642833 1135676 ~ 1151198 (-) True CI01000012_01139864_01192154
TU79075 other downstream 1018152 775364 ~ 775879 (-) False G69332
TU80715 other upstream 1072245 2866508 ~ 2866892 (-) True G70774
TU81962 other upstream 2739267 4533530 ~ 4534672 (-) True G71898
TU82190 other upstream 2981957 4776220 ~ 4776835 (-) False G72068
TU82191 other upstream 2981957 4776220 ~ 4780132 (-) True G72068
TU82349 other upstream 3499510 5293773 ~ 5302206 (-) True G72204

Expression Profile