RNA id: TU79572


Basic Information

Item Value
RNA id TU79572
length 456
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G69779
representative True

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 1818033 ~ 1818488 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTTTACTCAGCCAAACTTGTCAACAAGGCTACTTTACATGGATGCCAGCGCATTAGCAGGTAGTTGTTGAATCTCAGTTGTTTGATTTATGAGGTGAGGTCATGACTGCAGCCAGTGATGAGGCCAAAACCAGCACATCCTGTGCAAGTAGACTTTGACTATCTGCTATATTGGCAAGACCTTTTTGAAGGATATTGTTTTACTTATGTTCTTTTTGTGCACTTGGGCTTAACCGAGACTTGAGAGTTTGTAGACATTTAAGAGGCTGTTATGTCAACCTTGATTTATTGCAATATTGAGGTGTTCAGTTTTATTTTGATTTTAGAAAATAAACATGATTTCTCATCTTACAAATCAATTGTTTCTTATTTTTACTGGCATGTCTCTTAGGTATTGAGGACTAGTGCATCTTTGAACCTATATTCAGTATGAGTAAAATACTTAAGTACTGTTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU79571 lncRNA downstream 727 1817022 ~ 1817306 (-) True G69778
TU79570 lncRNA downstream 7904 1809924 ~ 1810129 (-) True G69777
TU79552 lncRNA downstream 23770 1794031 ~ 1794263 (-) True G69759
TU79545 lncRNA downstream 32023 1770260 ~ 1786010 (-) True G69752
TU79519 lncRNA downstream 97768 1720005 ~ 1720265 (-) True G69726
TU79574 lncRNA upstream 10507 1828995 ~ 1829224 (-) True G69781
TU79593 lncRNA upstream 43163 1861651 ~ 1861988 (-) True G69800
TU80337 lncRNA upstream 209059 2027547 ~ 2035108 (-) True G70439
TU80362 lncRNA upstream 262036 2080524 ~ 2082217 (-) True G70462
TU80371 lncRNA upstream 274382 2092870 ~ 2095569 (-) True G70469
CI01000012_01677949_01691893.mRNA mRNA downstream 125997 1677904 ~ 1692036 (-) True CI01000012_01677949_01691893
CI01000012_01601665_01604244.mRNA mRNA downstream 213680 1601654 ~ 1604353 (-) True CI01000012_01601665_01604244
CI01000012_01489297_01490202.mRNA mRNA downstream 327720 1488830 ~ 1490313 (-) True CI01000012_01489297_01490202
CI01000012_01256938_01257273.mRNA mRNA downstream 560760 1255717 ~ 1257273 (-) True CI01000012_01256938_01257273
CI01000012_01240945_01242653.mRNA mRNA downstream 575380 1240517 ~ 1242653 (-) True CI01000012_01240945_01242653
CI01000012_02239088_02240850.mRNA mRNA upstream 419912 2238400 ~ 2240862 (-) True CI01000012_02239088_02240850
CI01000012_02251322_02337964.mRNA mRNA upstream 432649 2251137 ~ 2339368 (-) True CI01000012_02251322_02337964
CI01000012_02357517_02361973.mRNA mRNA upstream 538636 2357124 ~ 2361973 (-) True CI01000012_02357517_02361973
CI01000012_02381631_02386668.mRNA mRNA upstream 562860 2381348 ~ 2386668 (-) True CI01000012_02381631_02386668
CI01000012_02395816_02404347.mRNA mRNA upstream 577069 2395557 ~ 2404347 (-) True CI01000012_02395816_02404347
TU79337 other downstream 441735 1332075 ~ 1376298 (-) True G69562
TU79336 other downstream 485132 1332075 ~ 1332901 (-) False G69562
TU79046 other downstream 666835 1135676 ~ 1151198 (-) True CI01000012_01139864_01192154
TU79075 other downstream 1042154 775364 ~ 775879 (-) False G69332
TU80715 other upstream 1048020 2866508 ~ 2866892 (-) True G70774
TU81962 other upstream 2715042 4533530 ~ 4534672 (-) True G71898
TU82190 other upstream 2957732 4776220 ~ 4776835 (-) False G72068
TU82191 other upstream 2957732 4776220 ~ 4780132 (-) True G72068
TU82349 other upstream 3475285 5293773 ~ 5302206 (-) True G72204

Expression Profile