RNA id: TU80703


Basic Information

Item Value
RNA id TU80703
length 210
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G70762
representative True

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 2851514 ~ 2851723 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GGCTTTTGTTATGTCAATTTACAAAAAAATTTCGCTCACTGCTCTACTTATGGAAGCATTTTTATTTTGAGTTTTGAACCAGTAGCAATTGTTATTATGACTGAAAACATAGCAACAGCAATATGTGTTCCACTGTACCTCAACCAAAAGATATATGAGCTGTGATGTCTGTCTGCACAAGTATGGAGATGTTCTGATCTAAACTCTTTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU80639 lncRNA downstream 11471 2803484 ~ 2840043 (-) True G70704
TU80668 lncRNA downstream 173433 2677871 ~ 2678081 (-) True G70728
TU80621 lncRNA downstream 263825 2587460 ~ 2587689 (-) True G70690
TU80618 lncRNA downstream 265406 2585496 ~ 2586108 (-) True G70687
TU80584 lncRNA downstream 346582 2504706 ~ 2504932 (-) True G70664
TU80706 lncRNA upstream 4520 2856243 ~ 2856472 (-) True G70765
TU80707 lncRNA upstream 6944 2858667 ~ 2858898 (-) True G70766
TU80710 lncRNA upstream 11092 2862815 ~ 2863091 (-) True G70769
TU80713 lncRNA upstream 13010 2864733 ~ 2864940 (-) True G70772
TU80717 lncRNA upstream 19453 2871176 ~ 2871506 (-) True G70776
CI01000012_02813455_02824934.mRNA mRNA downstream 26580 2813363 ~ 2824934 (-) True CI01000012_02813455_02824934
CI01000012_02614955_02631276.mRNA mRNA downstream 219069 2614869 ~ 2632445 (-) True CI01000012_02614955_02631276
CI01000012_02551954_02557017.mRNA mRNA downstream 294497 2551954 ~ 2557017 (-) True CI01000012_02551954_02557017
CI01000012_02549682_02550094.mRNA mRNA downstream 301420 2549671 ~ 2550094 (-) True CI01000012_02549682_02550094
CI01000012_02413852_02502617.mRNA mRNA downstream 348897 2413852 ~ 2502617 (-) True CI01000012_02413852_02502617
CI01000012_02967143_02967496.mRNA mRNA upstream 113947 2965670 ~ 2968315 (-) True CI01000012_02967143_02967496
CI01000012_03172201_03172736.mRNA mRNA upstream 319909 3171632 ~ 3172736 (-) True CI01000012_03172201_03172736
CI01000012_03280454_03281289.mRNA mRNA upstream 428148 3279871 ~ 3281289 (-) True CI01000012_03280454_03281289
CI01000012_03284445_03291645.mRNA mRNA upstream 432622 3284345 ~ 3291645 (-) True CI01000012_03284445_03291645
CI01000012_03292460_03316923.mRNA mRNA upstream 440437 3292160 ~ 3316923 (-) True CI01000012_03292460_03316923
TU79337 other downstream 1475216 1332075 ~ 1376298 (-) True G69562
TU79336 other downstream 1518613 1332075 ~ 1332901 (-) False G69562
TU79046 other downstream 1700316 1135676 ~ 1151198 (-) True CI01000012_01139864_01192154
TU79075 other downstream 2075635 775364 ~ 775879 (-) False G69332
TU80715 other upstream 14785 2866508 ~ 2866892 (-) True G70774
TU81962 other upstream 1681807 4533530 ~ 4534672 (-) True G71898
TU82190 other upstream 1924497 4776220 ~ 4776835 (-) False G72068
TU82191 other upstream 1924497 4776220 ~ 4780132 (-) True G72068
TU82349 other upstream 2442050 5293773 ~ 5302206 (-) True G72204

Expression Profile