RNA id: TU80707


Basic Information

Item Value
RNA id TU80707
length 232
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G70766
representative True

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 2858667 ~ 2858898 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GAAGTACAGTAACATACTCCATTCCGTTTAAGCTCTCAGATGAGACCAAACATGACAGCACATGTGCCTTGTAAAGCAGATGGTACTCCAAGATGGAACCATCCTGTACCTAGAGTGTGAGCAAGTAAGTGATGTGACGTGTGGCCAAGTATGGTGTCCCATTCTCAGAATTTGTGCTCTGCATTTCACCCATCCAAGTACACACACAGTAGTGAGCACACACACCTGGAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU80706 lncRNA downstream 2195 2856243 ~ 2856472 (-) True G70765
TU80703 lncRNA downstream 6944 2851514 ~ 2851723 (-) True G70762
TU80639 lncRNA downstream 18624 2803484 ~ 2840043 (-) True G70704
TU80668 lncRNA downstream 180586 2677871 ~ 2678081 (-) True G70728
TU80621 lncRNA downstream 270978 2587460 ~ 2587689 (-) True G70690
TU80710 lncRNA upstream 3917 2862815 ~ 2863091 (-) True G70769
TU80713 lncRNA upstream 5835 2864733 ~ 2864940 (-) True G70772
TU80717 lncRNA upstream 12278 2871176 ~ 2871506 (-) True G70776
TU80719 lncRNA upstream 14911 2873809 ~ 2874012 (-) True G70778
TU80721 lncRNA upstream 20001 2878899 ~ 2879112 (-) True G70780
CI01000012_02813455_02824934.mRNA mRNA downstream 33733 2813363 ~ 2824934 (-) True CI01000012_02813455_02824934
CI01000012_02614955_02631276.mRNA mRNA downstream 226222 2614869 ~ 2632445 (-) True CI01000012_02614955_02631276
CI01000012_02551954_02557017.mRNA mRNA downstream 301650 2551954 ~ 2557017 (-) True CI01000012_02551954_02557017
CI01000012_02549682_02550094.mRNA mRNA downstream 308573 2549671 ~ 2550094 (-) True CI01000012_02549682_02550094
CI01000012_02413852_02502617.mRNA mRNA downstream 356050 2413852 ~ 2502617 (-) True CI01000012_02413852_02502617
CI01000012_02967143_02967496.mRNA mRNA upstream 106772 2965670 ~ 2968315 (-) True CI01000012_02967143_02967496
CI01000012_03172201_03172736.mRNA mRNA upstream 312734 3171632 ~ 3172736 (-) True CI01000012_03172201_03172736
CI01000012_03280454_03281289.mRNA mRNA upstream 420973 3279871 ~ 3281289 (-) True CI01000012_03280454_03281289
CI01000012_03284445_03291645.mRNA mRNA upstream 425447 3284345 ~ 3291645 (-) True CI01000012_03284445_03291645
CI01000012_03292460_03316923.mRNA mRNA upstream 433262 3292160 ~ 3316923 (-) True CI01000012_03292460_03316923
TU79337 other downstream 1482369 1332075 ~ 1376298 (-) True G69562
TU79336 other downstream 1525766 1332075 ~ 1332901 (-) False G69562
TU79046 other downstream 1707469 1135676 ~ 1151198 (-) True CI01000012_01139864_01192154
TU79075 other downstream 2082788 775364 ~ 775879 (-) False G69332
TU80715 other upstream 7610 2866508 ~ 2866892 (-) True G70774
TU81962 other upstream 1674632 4533530 ~ 4534672 (-) True G71898
TU82190 other upstream 1917322 4776220 ~ 4776835 (-) False G72068
TU82191 other upstream 1917322 4776220 ~ 4780132 (-) True G72068
TU82349 other upstream 2434875 5293773 ~ 5302206 (-) True G72204

Expression Profile