RNA id: TU80719


Basic Information

Item Value
RNA id TU80719
length 204
lncRNA type inter_gene
GC content 0.27
exon number 1
gene id G70778
representative True

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 2873809 ~ 2874012 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ACAAACCTCTTGCGGAAGCTCAAACATGCTGCATAACACACGAGAATGAACCTCATTGGTACTCACGCGTCAAGCAAACATGCTTGGGCTTCCATTTACCACAACTGATGTGTGCGTTGATGAATGTTTACATGTGAATAAAAGCCTAAATTAAATGTTCATCATATAAAGCGATCGTGTCTCTTCAGAAAATTTAGACTAAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU80717 lncRNA downstream 2303 2871176 ~ 2871506 (-) True G70776
TU80713 lncRNA downstream 8869 2864733 ~ 2864940 (-) True G70772
TU80710 lncRNA downstream 10718 2862815 ~ 2863091 (-) True G70769
TU80707 lncRNA downstream 14911 2858667 ~ 2858898 (-) True G70766
TU80706 lncRNA downstream 17337 2856243 ~ 2856472 (-) True G70765
TU80721 lncRNA upstream 4887 2878899 ~ 2879112 (-) True G70780
TU80735 lncRNA upstream 33724 2907736 ~ 2907963 (-) True G70789
TU80756 lncRNA upstream 53653 2927665 ~ 2927913 (-) True G70808
TU80771 lncRNA upstream 54488 2928500 ~ 2929086 (-) True G70818
TU80786 lncRNA upstream 69999 2944011 ~ 3115095 (-) True G70833
CI01000012_02813455_02824934.mRNA mRNA downstream 48875 2813363 ~ 2824934 (-) True CI01000012_02813455_02824934
CI01000012_02614955_02631276.mRNA mRNA downstream 241364 2614869 ~ 2632445 (-) True CI01000012_02614955_02631276
CI01000012_02551954_02557017.mRNA mRNA downstream 316792 2551954 ~ 2557017 (-) True CI01000012_02551954_02557017
CI01000012_02549682_02550094.mRNA mRNA downstream 323715 2549671 ~ 2550094 (-) True CI01000012_02549682_02550094
CI01000012_02413852_02502617.mRNA mRNA downstream 371192 2413852 ~ 2502617 (-) True CI01000012_02413852_02502617
CI01000012_02967143_02967496.mRNA mRNA upstream 91658 2965670 ~ 2968315 (-) True CI01000012_02967143_02967496
CI01000012_03172201_03172736.mRNA mRNA upstream 297620 3171632 ~ 3172736 (-) True CI01000012_03172201_03172736
CI01000012_03280454_03281289.mRNA mRNA upstream 405859 3279871 ~ 3281289 (-) True CI01000012_03280454_03281289
CI01000012_03284445_03291645.mRNA mRNA upstream 410333 3284345 ~ 3291645 (-) True CI01000012_03284445_03291645
CI01000012_03292460_03316923.mRNA mRNA upstream 418148 3292160 ~ 3316923 (-) True CI01000012_03292460_03316923
TU80715 other downstream 6917 2866508 ~ 2866892 (-) True G70774
TU79337 other downstream 1497511 1332075 ~ 1376298 (-) True G69562
TU79336 other downstream 1540908 1332075 ~ 1332901 (-) False G69562
TU79046 other downstream 1722611 1135676 ~ 1151198 (-) True CI01000012_01139864_01192154
TU79072 other downstream 2097930 775410 ~ 775879 (-) True G69332
TU81962 other upstream 1659518 4533530 ~ 4534672 (-) True G71898
TU82190 other upstream 1902208 4776220 ~ 4776835 (-) False G72068
TU82191 other upstream 1902208 4776220 ~ 4780132 (-) True G72068
TU82349 other upstream 2419761 5293773 ~ 5302206 (-) True G72204
TU82391 other upstream 2489630 5363642 ~ 5364083 (-) False G72235

Expression Profile