RNA id: TU80721


Basic Information

Item Value
RNA id TU80721
length 214
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G70780
representative True

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 2878899 ~ 2879112 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTATATGTTCATAATATGATTTTTATATTTAATTGGGATTTATTATTTGCTAAAATCTGAAGCCCTAGAATGTAACTGTCACAGTTATGTTTTGTTAGTTTAGTCATTCACAGACTTTTAGTATGTTTTTCATTAGTTTCCTGTTTCCTTTGTTCAGTTCTCCCATTCCCCAGCATGCTCCGTTCCTCTGGTTGAGCTTCACGTTGAATCCCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU80719 lncRNA downstream 4887 2873809 ~ 2874012 (-) True G70778
TU80717 lncRNA downstream 7393 2871176 ~ 2871506 (-) True G70776
TU80713 lncRNA downstream 13959 2864733 ~ 2864940 (-) True G70772
TU80710 lncRNA downstream 15808 2862815 ~ 2863091 (-) True G70769
TU80707 lncRNA downstream 20001 2858667 ~ 2858898 (-) True G70766
TU80735 lncRNA upstream 28624 2907736 ~ 2907963 (-) True G70789
TU80756 lncRNA upstream 48553 2927665 ~ 2927913 (-) True G70808
TU80771 lncRNA upstream 49388 2928500 ~ 2929086 (-) True G70818
TU80786 lncRNA upstream 64899 2944011 ~ 3115095 (-) True G70833
TU80824 lncRNA upstream 142225 3021337 ~ 3021872 (-) True G70868
CI01000012_02813455_02824934.mRNA mRNA downstream 53965 2813363 ~ 2824934 (-) True CI01000012_02813455_02824934
CI01000012_02614955_02631276.mRNA mRNA downstream 246454 2614869 ~ 2632445 (-) True CI01000012_02614955_02631276
CI01000012_02551954_02557017.mRNA mRNA downstream 321882 2551954 ~ 2557017 (-) True CI01000012_02551954_02557017
CI01000012_02549682_02550094.mRNA mRNA downstream 328805 2549671 ~ 2550094 (-) True CI01000012_02549682_02550094
CI01000012_02413852_02502617.mRNA mRNA downstream 376282 2413852 ~ 2502617 (-) True CI01000012_02413852_02502617
CI01000012_02967143_02967496.mRNA mRNA upstream 86558 2965670 ~ 2968315 (-) True CI01000012_02967143_02967496
CI01000012_03172201_03172736.mRNA mRNA upstream 292520 3171632 ~ 3172736 (-) True CI01000012_03172201_03172736
CI01000012_03280454_03281289.mRNA mRNA upstream 400759 3279871 ~ 3281289 (-) True CI01000012_03280454_03281289
CI01000012_03284445_03291645.mRNA mRNA upstream 405233 3284345 ~ 3291645 (-) True CI01000012_03284445_03291645
CI01000012_03292460_03316923.mRNA mRNA upstream 413048 3292160 ~ 3316923 (-) True CI01000012_03292460_03316923
TU80715 other downstream 12007 2866508 ~ 2866892 (-) True G70774
TU79337 other downstream 1502601 1332075 ~ 1376298 (-) True G69562
TU79336 other downstream 1545998 1332075 ~ 1332901 (-) False G69562
TU79046 other downstream 1727701 1135676 ~ 1151198 (-) True CI01000012_01139864_01192154
TU79072 other downstream 2103020 775410 ~ 775879 (-) True G69332
TU81962 other upstream 1654418 4533530 ~ 4534672 (-) True G71898
TU82190 other upstream 1897108 4776220 ~ 4776835 (-) False G72068
TU82191 other upstream 1897108 4776220 ~ 4780132 (-) True G72068
TU82349 other upstream 2414661 5293773 ~ 5302206 (-) True G72204
TU82391 other upstream 2484530 5363642 ~ 5364083 (-) False G72235

Expression Profile