RNA id: TU80824


Basic Information

Item Value
RNA id TU80824
length 416
lncRNA type antisense_over
GC content 0.44
exon number 2
gene id G70868
representative True

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 3021337 ~ 3021872 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTGCAAGAACATTTATTTGAAATTGAAATCTTTTGTAAAACCATGAATTAAGTTCTTTACAAATTAAAGTTACTTTCTCTTCCCTGATAGGGAACCATCTTGGACCAGAAACAAACCAGCTACCAGATGATCAACCCAGTTTCAGATGGATTGTGGAACATGCACACAGGAGCAGACTCTCTTTTACACGTCTGGACCAGAGTGGTCGTCTCAGAGCTGTGGTTATGTGTGTGTGTTAGGGGACCAGAGTGTTTGCTGTCACCTCCCTGCTGAAAGGAATCAGACAAATAAGTTCAAACTTCATGGCCAAGTTCTGTTTCCCTGAGCCTGTGACCTGATTCCAGCAAGCTGGCCAATGAACGTGTGTGTTCTGACTGCTGTTTGCAGGAGAGGTGAGTGTGTAGCTTTCTCTCCGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU80771 lncRNA downstream 92251 2928500 ~ 2929086 (-) True G70818
TU80756 lncRNA downstream 93424 2927665 ~ 2927913 (-) True G70808
TU80735 lncRNA downstream 113374 2907736 ~ 2907963 (-) True G70789
TU80721 lncRNA downstream 142225 2878899 ~ 2879112 (-) True G70780
TU80719 lncRNA downstream 147325 2873809 ~ 2874012 (-) True G70778
TU80875 lncRNA upstream 209827 3231699 ~ 3236640 (-) True G70916
TU80917 lncRNA upstream 363434 3385306 ~ 3385513 (-) True G70956
TU80767 lncRNA upstream 475163 3497035 ~ 3504550 (-) True G70814
TU80766 lncRNA upstream 508737 3530609 ~ 3545040 (-) True G70813
TU81757 lncRNA upstream 640751 3662623 ~ 3663090 (-) True G71717
CI01000012_02967143_02967496.mRNA mRNA downstream 53022 2965670 ~ 2968315 (-) True CI01000012_02967143_02967496
CI01000012_02813455_02824934.mRNA mRNA downstream 196403 2813363 ~ 2824934 (-) True CI01000012_02813455_02824934
CI01000012_02614955_02631276.mRNA mRNA downstream 388892 2614869 ~ 2632445 (-) True CI01000012_02614955_02631276
CI01000012_02551954_02557017.mRNA mRNA downstream 464320 2551954 ~ 2557017 (-) True CI01000012_02551954_02557017
CI01000012_02549682_02550094.mRNA mRNA downstream 471243 2549671 ~ 2550094 (-) True CI01000012_02549682_02550094
CI01000012_03172201_03172736.mRNA mRNA upstream 149760 3171632 ~ 3172736 (-) True CI01000012_03172201_03172736
CI01000012_03280454_03281289.mRNA mRNA upstream 257999 3279871 ~ 3281289 (-) True CI01000012_03280454_03281289
CI01000012_03284445_03291645.mRNA mRNA upstream 262473 3284345 ~ 3291645 (-) True CI01000012_03284445_03291645
CI01000012_03292460_03316923.mRNA mRNA upstream 270288 3292160 ~ 3316923 (-) True CI01000012_03292460_03316923
CI01000012_03327683_03341200.mRNA mRNA upstream 305760 3327632 ~ 3341200 (-) True CI01000012_03327683_03341200
TU80715 other downstream 154445 2866508 ~ 2866892 (-) True G70774
TU79337 other downstream 1645039 1332075 ~ 1376298 (-) True G69562
TU79336 other downstream 1688436 1332075 ~ 1332901 (-) False G69562
TU79046 other downstream 1870139 1135676 ~ 1151198 (-) True CI01000012_01139864_01192154
TU79072 other downstream 2245458 775410 ~ 775879 (-) True G69332
TU81962 other upstream 1511658 4533530 ~ 4534672 (-) True G71898
TU82190 other upstream 1754348 4776220 ~ 4776835 (-) False G72068
TU82191 other upstream 1754348 4776220 ~ 4780132 (-) True G72068
TU82349 other upstream 2271901 5293773 ~ 5302206 (-) True G72204
TU82391 other upstream 2341770 5363642 ~ 5364083 (-) False G72235

Expression Profile