RNA id: TU81114


Basic Information

Item Value
RNA id TU81114
length 221
lncRNA type intronic
GC content 0.36
exon number 1
gene id G71145
representative True

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 4067613 ~ 4067833 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATGATTTCTGCCTGAGTCCCGTCGGATTGCTTTCCATCAGCTGTGGAGGTGAATACGACAACTCCCATTATTCCACGCTCATTCACGGTGTCATCAAGCTACGCCTTTGTTATTGTTTTAAATAAGCGACATCTAGTGGTGAAACTTACATACTGTGCCTTTAAACTGAAATAAATTTCATTAAAAATCTAAATTGAATAAGTTTTTTTTTTTTTTCAAAC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU81107 lncRNA upstream 13613 4053683 ~ 4054000 (+) True CI01000012_04052923_04100797
TU81102 lncRNA upstream 23378 4042982 ~ 4044235 (+) True G71134
TU81091 lncRNA upstream 47307 4019905 ~ 4020306 (+) True G71124
TU81004 lncRNA upstream 102045 3825833 ~ 3965568 (+) True G71038
TU81121 lncRNA downstream 20036 4087869 ~ 4088242 (+) True G71152
TU81125 lncRNA downstream 39002 4106835 ~ 4107122 (+) True G71156
TU81127 lncRNA downstream 42108 4109941 ~ 4110276 (+) True G71158
TU81287 lncRNA downstream 171292 4239125 ~ 4239406 (+) True G71305
TU81357 lncRNA downstream 278971 4346804 ~ 4347380 (+) True G71375
CI01000012_03989870_04006406.mRNA mRNA upstream 61018 3989711 ~ 4006595 (+) True CI01000012_03989870_04006406
CI01000012_03736684_03742335.mRNA mRNA upstream 324547 3736636 ~ 3743066 (+) True CI01000012_03736684_03742335
CI01000012_03633636_03709136.mRNA mRNA upstream 358477 3633636 ~ 3709136 (+) True CI01000012_03633636_03709136
CI01000012_03414617_03418724.mRNA mRNA upstream 648205 3414617 ~ 3419408 (+) True CI01000012_03414617_03418724
CI01000012_03394096_03396897.mRNA mRNA upstream 670716 3393889 ~ 3396897 (+) True CI01000012_03394096_03396897
CI01000012_04179776_04184166.mRNA mRNA downstream 111943 4179776 ~ 4184450 (+) True CI01000012_04179776_04184166
CI01000012_04209791_04237026.mRNA mRNA downstream 141193 4209026 ~ 4237160 (+) True CI01000012_04209791_04237026
CI01000012_04266133_04266370.mRNA mRNA downstream 198300 4266133 ~ 4267426 (+) True CI01000012_04266133_04266370
CI01000012_04285964_04292319.mRNA mRNA downstream 217761 4285594 ~ 4293775 (+) True CI01000012_04285964_04292319
CI01000012_04371425_04373907.mRNA mRNA downstream 303592 4371425 ~ 4373991 (+) True CI01000012_04371425_04373907
TU79850 other upstream 1436228 2622478 ~ 2631385 (+) True G70029
TU78809 other upstream 2369377 1697400 ~ 1698236 (+) True CI01000012_01698932_01719811
TU78309 other upstream 3382757 683523 ~ 684856 (+) False G68725
TU78310 other upstream 3382825 683523 ~ 684788 (+) True G68725
TU78307 other upstream 3382917 683523 ~ 684696 (+) False G68725
TU81174 other downstream 352406 4420239 ~ 4420494 (+) True G71194
TU81162 other downstream 430620 4498453 ~ 4500089 (+) True CI01000012_04495631_04501066
TU81129 other downstream 1109062 5176895 ~ 5180970 (+) False CI01000012_05177587_05180517
TU81130 other downstream 1109062 5176895 ~ 5180970 (+) False CI01000012_05177587_05180517
TU81131 other downstream 1109062 5178778 ~ 5179220 (+) True G71159

Expression Profile