RNA id: TU81877


Basic Information

Item Value
RNA id TU81877
length 276
lncRNA type inter_gene
GC content 0.33
exon number 1
gene id G71834
representative True

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 4126271 ~ 4126546 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CAAATTCAGTATACAAAACTTTTCAGTCAGGTTTTAGAAAATTACATAGTACTGAATCTGCGTTATTGAAAGTTACAAACGATATTATGCTGTCTACTGATAATGGGAATGCTGTTGCTTTGGTCCTTTTAGATCTCAGTTCAGCATTTGATATGGTTGATCATAACATTTTAATTTCTAGACTGGAAAGTTATGTAGGCATTCGGGGTATCGTTCTAAAGTGGTTTTGGTCATATTTAACCAATAGGAAGTTTTCTGTATGTATTGGAAAACATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU81874 lncRNA downstream 15888 4109910 ~ 4110383 (-) True G71831
TU81868 lncRNA downstream 34190 4091875 ~ 4092081 (-) True G71825
TU81856 lncRNA downstream 74039 4051954 ~ 4052232 (-) True G71814
TU81846 lncRNA downstream 106002 4019981 ~ 4020269 (-) True G71805
TU81845 lncRNA downstream 106715 4019227 ~ 4019556 (-) True G71804
TU81891 lncRNA upstream 40965 4167511 ~ 4192185 (-) True G71847
TU81956 lncRNA upstream 298445 4424991 ~ 4426630 (-) False G71895
TU81957 lncRNA upstream 298445 4424991 ~ 4426630 (-) False G71895
TU81958 lncRNA upstream 298445 4424991 ~ 4426630 (-) True G71895
TU81937 lncRNA upstream 306362 4432908 ~ 4487952 (-) False G71887
CI01000012_04048205_04049218.mRNA mRNA downstream 76765 4046153 ~ 4049506 (-) True CI01000012_04048205_04049218
CI01000012_03963989_03965578.mRNA mRNA downstream 160531 3963173 ~ 3965740 (-) True CI01000012_03963989_03965578
CI01000012_03875714_03882574.mRNA mRNA downstream 243697 3875082 ~ 3882574 (-) True CI01000012_03875714_03882574
CI01000012_03794143_03871728.mRNA mRNA downstream 253023 3793950 ~ 3873248 (-) False CI01000012_03794143_03871728
CI01000012_03771803_03792867.mRNA mRNA downstream 333081 3771178 ~ 3793190 (-) False CI01000012_03771803_03792867
CI01000012_04375448_04378813.mRNA mRNA upstream 248812 4375358 ~ 4379404 (-) True CI01000012_04375448_04378813
CI01000012_04404769_04419096.mRNA mRNA upstream 277780 4404326 ~ 4419096 (-) True CI01000012_04404769_04419096
CI01000012_04706769_04709074.mRNA mRNA upstream 580155 4706701 ~ 4709074 (-) True CI01000012_04706769_04709074
CI01000012_04839741_04854323.mRNA mRNA upstream 712929 4839475 ~ 4854999 (-) True CI01000012_04839741_04854323
CI01000012_04879477_04890031.mRNA mRNA upstream 752894 4879440 ~ 4890031 (-) True CI01000012_04879477_04890031
TU80715 other downstream 1259379 2866508 ~ 2866892 (-) True G70774
TU79337 other downstream 2749973 1332075 ~ 1376298 (-) True G69562
TU79336 other downstream 2793370 1332075 ~ 1332901 (-) False G69562
TU79046 other downstream 2975073 1135676 ~ 1151198 (-) True CI01000012_01139864_01192154
TU79072 other downstream 3350392 775410 ~ 775879 (-) True G69332
TU81962 other upstream 406984 4533530 ~ 4534672 (-) True G71898
TU82190 other upstream 649674 4776220 ~ 4776835 (-) False G72068
TU82191 other upstream 649674 4776220 ~ 4780132 (-) True G72068
TU82349 other upstream 1167227 5293773 ~ 5302206 (-) True G72204
TU82391 other upstream 1237096 5363642 ~ 5364083 (-) False G72235

Expression Profile