RNA id: TU81357


Basic Information

Item Value
RNA id TU81357
length 351
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G71375
representative True

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 4346804 ~ 4347380 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATACAGTGACTTGTTAACCTGATCTAGCTTCCGAGACCCCCCGGTACTGCCGCACGAGCGCGAGATCTTGCTTTCCTGCCGCAAGCGCACCTCTCTCTGCGTCTGCTGTTCAGTGAAAGAGAATTTGACTTGCCCGGCTTGACAAGGAGCCTGATTCAAAATGGAGTTTTTATAACTTGATACAGTTAAGCAAAATCACAGGACCAATGCTGTTTTCCTAAATACAATCACGATTAAAAACGTGACACTGATTTCATTACTGAATGATTCAGCATTTTGAACGAATCGGTTCAAAGATTCAATGACCTATTCATAAACAATTGCCTCATTCTTGAATGAATCAGCCATTGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU81287 lncRNA upstream 107398 4239125 ~ 4239406 (+) True G71305
TU81127 lncRNA upstream 236528 4109941 ~ 4110276 (+) True G71158
TU81125 lncRNA upstream 239682 4106835 ~ 4107122 (+) True G71156
TU81121 lncRNA upstream 258562 4087869 ~ 4088242 (+) True G71152
TU81114 lncRNA upstream 278971 4067613 ~ 4067833 (+) True G71145
TU81218 lncRNA downstream 134258 4481638 ~ 4505484 (+) True G71238
TU81219 lncRNA downstream 181976 4529356 ~ 4585221 (+) True G71239
TU81195 lncRNA downstream 197484 4544864 ~ 4547096 (+) True G71215
TU81424 lncRNA downstream 294157 4641537 ~ 4641848 (+) True G71442
TU81188 lncRNA downstream 359176 4706556 ~ 4710923 (+) True G71208
CI01000012_04285964_04292319.mRNA mRNA upstream 53029 4285594 ~ 4293775 (+) True CI01000012_04285964_04292319
CI01000012_04266133_04266370.mRNA mRNA upstream 79378 4266133 ~ 4267426 (+) True CI01000012_04266133_04266370
CI01000012_04209791_04237026.mRNA mRNA upstream 109644 4209026 ~ 4237160 (+) True CI01000012_04209791_04237026
CI01000012_04179776_04184166.mRNA mRNA upstream 162354 4179776 ~ 4184450 (+) True CI01000012_04179776_04184166
CI01000012_04052923_04100797.mRNA mRNA upstream 245804 4052613 ~ 4101000 (+) False CI01000012_04052923_04100797
CI01000012_04371425_04373907.mRNA mRNA downstream 24045 4371425 ~ 4373991 (+) True CI01000012_04371425_04373907
CI01000012_04386557_04402516.mRNA mRNA downstream 38823 4386203 ~ 4402975 (+) True CI01000012_04386557_04402516
CI01000012_04424569_04425090.mRNA mRNA downstream 77189 4424569 ~ 4425756 (+) False CI01000012_04424569_04425090
CI01000012_04436374_04437448.mRNA mRNA downstream 87900 4435280 ~ 4437599 (+) True CI01000012_04436374_04437448
CI01000012_04488201_04489863.mRNA mRNA downstream 140821 4488201 ~ 4489897 (+) True CI01000012_04488201_04489863
TU79850 other upstream 1715419 2622478 ~ 2631385 (+) True G70029
TU78809 other upstream 2648568 1697400 ~ 1698236 (+) True CI01000012_01698932_01719811
TU78309 other upstream 3661948 683523 ~ 684856 (+) False G68725
TU78310 other upstream 3662016 683523 ~ 684788 (+) True G68725
TU78307 other upstream 3662108 683523 ~ 684696 (+) False G68725
TU81174 other downstream 72859 4420239 ~ 4420494 (+) True G71194
TU81162 other downstream 151073 4498453 ~ 4500089 (+) True CI01000012_04495631_04501066
TU81129 other downstream 829515 5176895 ~ 5180970 (+) False CI01000012_05177587_05180517
TU81130 other downstream 829515 5176895 ~ 5180970 (+) False CI01000012_05177587_05180517
TU81131 other downstream 829515 5178778 ~ 5179220 (+) True G71159

Expression Profile