RNA id: TU81956



Basic Information


Item Value
RNA id TU81956
length 1570
lncRNA type antisense_over
GC content 0.41
exon number 2
gene id G71895
representative False

Chromosome Information


Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 4424991 ~ 4426630 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


TGGGGATCCATTTGCAGCTTTATTTAGAAAAAACAACAAGGCAGACAGGGGCAAAGGCAAGGACATAAACAGGGACAGGCAATGGTCGAGGCAGGCGGCAGACAAACAGTATCGGGTCACAGGCGGAGATCAGGGCAGGCGGCAAGCAAACACAGTCCAGTACACAGGCAAAGATCAGGGCAGGCAGCAGAGAATCACAACGAATAAACAGTCCAACGGTAACAGAATAAACAGTCCACAAGAAAACGCTCAGAAATGATCACCGGGGCAAATCAGGACTTCGCAGTGAGTGAGTGAGTGTGTGTGTGTGTGTGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGTGTGTGTGTGTGTGTGAGTGAGTGAGTGAGTGAGTGAGTGTGAGTGTGTGTGTGTGTGTGTGTCTTAAATAGTGTGGGTGTGATGAGGTGCAGGTGTGTGCGTGATCAGTCCCAGGAATGAGGGCCTGTGGGAAACGTAGTCCGAATGGGAACAGTCAATATTCGGGTGATGGCTCCCTCCGGTGGTGCGGAGGAGGAGGCGAGGGAGCCACATTCGTGACAGACACACTTTCATTACGAAATAATAAACATATCAATCTATTAAGAAGCTGATGAAAAACAATATTTCCCCACCACTGAAACAGTAGGGTCTAAAGAAGGTAAAATAGAGGGATCGGGGATATGTTGAAACAGTCTATTAACTCCAGATGGTATGGCATCAAAGACTATAGTATTCTTTAGGGGTAATGGGAATGTTGAAAGGACTGAGAAATTCCTCATAGTTTAATAAATGGCCATTTACAATAAACAATTGACTTACAAGCAAAATATCTGCCTCAAACCTGAAAGAAAAGAGATTTGTTTTTGATTCAATTTATTTATTTATTTATTTAATAGGGTCAATAAATGCAATTAAATTATGAACATTAGTATAAAATACAAAAGTTTAACAAGCCGGATTATAGCAACATTGCTAATTTACATCCGTAGTCCCTAGGCAGGTACACAAGGACACATACTCAAATATACATAAAGCATTAATAGCCAAATACTCCACACATTATTTAAAATAACCAAGTAAAATGTTTACACTTCTGGTTCGACATAAGCAACTTTTTAAGGTGATCTTTGTAGGTGTAATATGTAGAATAGTGTCTTAATGACCTGGGTAAGCTATTTCAATAAATACTCCCCATTACAGACAATACTTTTTGTCCAAAAGTCGTTTGTCTATATAGCACCCAGCAACACGCTCTAATGAAGACCTAGTACCAATGCCACAATCCATCTTCTTTTTTCTTTTTTTTAATAAATTAATTTAACAAAGGTGGGGCAAGCCCTTGCCATGAACCTATGAAATTTAGATAATTTAGCTGGTATTTTTTCAACATTATAATTGCAAAGCTGCACTGACTTTGTCAGTGTTTGTGATCAGAAGCTCAATGGACATTCCTTATCTCCTCATCCTCTTCAACAAACCAACAGCTCCTCCTAACAGACCCCCCGCAGTGCCTCCCACTGATGCCACACCAGCTGTTGCAGCTGCAGACATA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU81891 lncRNA downstream 232806 4167511 ~ 4192185 (-) True G71847
TU81877 lncRNA downstream 298445 4126271 ~ 4126546 (-) True G71834
TU81874 lncRNA downstream 314608 4109910 ~ 4110383 (-) True G71831
TU81868 lncRNA downstream 332910 4091875 ~ 4092081 (-) True G71825
TU81856 lncRNA downstream 372759 4051954 ~ 4052232 (-) True G71814
TU81937 lncRNA upstream 6278 4432908 ~ 4487952 (-) False G71887
TU81935 lncRNA upstream 9017 4435647 ~ 4487952 (-) True G71887
TU81942 lncRNA upstream 15127 4441757 ~ 4490039 (-) False G71890
TU81944 lncRNA upstream 15127 4441757 ~ 4490039 (-) False G71890
TU82042 lncRNA upstream 41810 4468440 ~ 4477940 (-) True G71957
CI01000012_04404769_04419096.mRNA mRNA downstream 5895 4404326 ~ 4419096 (-) True CI01000012_04404769_04419096
CI01000012_04375448_04378813.mRNA mRNA downstream 45587 4375358 ~ 4379404 (-) True CI01000012_04375448_04378813
CI01000012_04048205_04049218.mRNA mRNA downstream 375485 4046153 ~ 4049506 (-) True CI01000012_04048205_04049218
CI01000012_03963989_03965578.mRNA mRNA downstream 459251 3963173 ~ 3965740 (-) True CI01000012_03963989_03965578
CI01000012_03875714_03882574.mRNA mRNA downstream 542417 3875082 ~ 3882574 (-) True CI01000012_03875714_03882574
CI01000012_04706769_04709074.mRNA mRNA upstream 280071 4706701 ~ 4709074 (-) True CI01000012_04706769_04709074
CI01000012_04839741_04854323.mRNA mRNA upstream 412845 4839475 ~ 4854999 (-) True CI01000012_04839741_04854323
CI01000012_04879477_04890031.mRNA mRNA upstream 452810 4879440 ~ 4890031 (-) True CI01000012_04879477_04890031
CI01000012_04926292_04930302.mRNA mRNA upstream 498866 4925496 ~ 4930474 (-) True CI01000012_04926292_04930302
CI01000012_05022143_05030697.mRNA mRNA upstream 595113 5021743 ~ 5030697 (-) True CI01000012_05022143_05030697
TU80715 other downstream 1558099 2866508 ~ 2866892 (-) True G70774
TU79337 other downstream 3048693 1332075 ~ 1376298 (-) True G69562
TU79336 other downstream 3092090 1332075 ~ 1332901 (-) False G69562
TU79046 other downstream 3273793 1135676 ~ 1151198 (-) True CI01000012_01139864_01192154
TU79072 other downstream 3649112 775410 ~ 775879 (-) True G69332
TU81962 other upstream 106900 4533530 ~ 4534672 (-) True G71898
TU82190 other upstream 349590 4776220 ~ 4776835 (-) False G72068
TU82191 other upstream 349590 4776220 ~ 4780132 (-) True G72068
TU82349 other upstream 867143 5293773 ~ 5302206 (-) True G72204
TU82391 other upstream 937012 5363642 ~ 5364083 (-) False G72235

Expression Profile