RNA id: TU81219


Basic Information

Item Value
RNA id TU81219
length 470
lncRNA type read_through
GC content 0.44
exon number 2
gene id G71239
representative True

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 4529356 ~ 4585221 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TGCAAAATTTTCTTTTATCTGAAAAGAGGACTTTCGGCCACTGTTCACTGTCCAGTTCTTTTTCTCCTTAGCCCAGGTAAGATGCTTCTGACGTTGTCTCTGGTTCAGAAGTGGCTTGGTAGTCCTTTTCCTGAAGATGTCTGAGTGTGGTGACTCTTGATGCGCTGACTCCGGCTTCATTCTACTCATTGTGAAGCTCTCCCAAGTGTTTGAATCGGCTTTACTTGACAGTATTCTCAAGCTTGCGGTCATCCCTGTTGCTTGTGCACCTTTGCCTACCCAATTTCTTCCTTCGAGTCAACTTTGCATTTAATATGCTTTGATACATCACTCTGTAAACAGCCACCCCATTCAGTAATGACCTTCTGTGACTTACTCTCTTTGTGGAGGGTGTCAATGATTGTCTCCTGGACCATTGCCAAGTCAGCAGTCTTCCCCATTAGTGTGGTTTCAAAGAACAAAAGATACCC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU81218 lncRNA upstream 23872 4481638 ~ 4505484 (+) True G71238
TU81357 lncRNA upstream 181976 4346804 ~ 4347380 (+) True G71375
TU81287 lncRNA upstream 289950 4239125 ~ 4239406 (+) True G71305
TU81127 lncRNA upstream 419080 4109941 ~ 4110276 (+) True G71158
TU81125 lncRNA upstream 422234 4106835 ~ 4107122 (+) True G71156
TU81424 lncRNA downstream 56316 4641537 ~ 4641848 (+) True G71442
TU81188 lncRNA downstream 121335 4706556 ~ 4710923 (+) True G71208
TU81460 lncRNA downstream 205435 4790656 ~ 4790866 (+) True G71478
TU81217 lncRNA downstream 207317 4792538 ~ 4850513 (+) True G71237
TU81470 lncRNA downstream 285367 4870588 ~ 4870819 (+) True G71488
CI01000012_04495631_04501066.mRNA mRNA upstream 28290 4495631 ~ 4501066 (+) False CI01000012_04495631_04501066
CI01000012_04488201_04489863.mRNA mRNA upstream 39459 4488201 ~ 4489897 (+) True CI01000012_04488201_04489863
CI01000012_04436374_04437448.mRNA mRNA upstream 91757 4435280 ~ 4437599 (+) True CI01000012_04436374_04437448
CI01000012_04424569_04425090.mRNA mRNA upstream 103600 4424569 ~ 4425756 (+) False CI01000012_04424569_04425090
CI01000012_04386557_04402516.mRNA mRNA upstream 126381 4386203 ~ 4402975 (+) True CI01000012_04386557_04402516
CI01000012_04595199_04620295.mRNA mRNA downstream 8646 4593867 ~ 4620453 (+) True CI01000012_04595199_04620295
CI01000012_04647182_04692241.mRNA mRNA downstream 61961 4647182 ~ 4692476 (+) True CI01000012_04647182_04692241
CI01000012_04722087_04836261.mRNA mRNA downstream 136866 4722087 ~ 4837574 (+) True CI01000012_04722087_04836261
CI01000012_04939174_04962741.mRNA mRNA downstream 352925 4938146 ~ 4962741 (+) True CI01000012_04939174_04962741
CI01000012_04966772_04976751.mRNA mRNA downstream 381494 4966715 ~ 4976903 (+) True CI01000012_04966772_04976751
TU81162 other upstream 29267 4498453 ~ 4500089 (+) True CI01000012_04495631_04501066
TU81174 other upstream 103709 4420239 ~ 4420494 (+) True G71194
TU79850 other upstream 1897971 2622478 ~ 2631385 (+) True G70029
TU78809 other upstream 2831120 1697400 ~ 1698236 (+) True CI01000012_01698932_01719811
TU78309 other upstream 3844500 683523 ~ 684856 (+) False G68725
TU81129 other downstream 591674 5176895 ~ 5180970 (+) False CI01000012_05177587_05180517
TU81130 other downstream 591674 5176895 ~ 5180970 (+) False CI01000012_05177587_05180517
TU81131 other downstream 591674 5178778 ~ 5179220 (+) True G71159
TU81132 other downstream 591674 5176895 ~ 5180970 (+) True CI01000012_05177587_05180517
TU81179 other downstream 828029 5413250 ~ 5416785 (+) True G71199

Expression Profile