RNA id: TU82104


Basic Information

Item Value
RNA id TU82104
length 262
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G72014
representative True

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 4626919 ~ 4627180 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CGCAAAACAAAAATAACGACTTTATTCAACAACATCATCTCTTCTGTGTCATTCTCATACTGTTTACGTCCAGTGCTTCCAGGTTCTACGTCAGAAGGCCGACTCATTATTGGCAGAGCGGTTCACGTGAGCAGCACGACGCATGCGTGTGATGCTGACACAGGAGCCGGCCAATACGTTCTGAAGTAGAAACTGGAAGTGCTGAACATAAACAGCGTATGAGATATTGTTGAATAAAGTTGTTATTTGTGTTTTGTTTTTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU81960 lncRNA downstream 40803 4582855 ~ 4586116 (-) True G71897
TU81970 lncRNA downstream 41745 4529357 ~ 4585174 (-) True G71906
TU82066 lncRNA downstream 42506 4528424 ~ 4584413 (-) False G71979
TU82067 lncRNA downstream 42506 4528485 ~ 4584413 (-) True G71979
TU82064 lncRNA downstream 104678 4521968 ~ 4522241 (-) True G71977
TU82106 lncRNA upstream 1064 4628244 ~ 4628572 (-) True G72016
TU82109 lncRNA upstream 4315 4631495 ~ 4631791 (-) True G72019
TU82111 lncRNA upstream 11321 4638501 ~ 4638826 (-) True G72021
TU82151 lncRNA upstream 107157 4734337 ~ 4744874 (-) False G72054
TU82154 lncRNA upstream 117439 4744619 ~ 4745427 (-) False G72054
CI01000012_04404769_04419096.mRNA mRNA downstream 207823 4404326 ~ 4419096 (-) True CI01000012_04404769_04419096
CI01000012_04375448_04378813.mRNA mRNA downstream 247515 4375358 ~ 4379404 (-) True CI01000012_04375448_04378813
CI01000012_04048205_04049218.mRNA mRNA downstream 577413 4046153 ~ 4049506 (-) True CI01000012_04048205_04049218
CI01000012_03963989_03965578.mRNA mRNA downstream 661179 3963173 ~ 3965740 (-) True CI01000012_03963989_03965578
CI01000012_03875714_03882574.mRNA mRNA downstream 744345 3875082 ~ 3882574 (-) True CI01000012_03875714_03882574
CI01000012_04706769_04709074.mRNA mRNA upstream 79521 4706701 ~ 4709074 (-) True CI01000012_04706769_04709074
CI01000012_04839741_04854323.mRNA mRNA upstream 212295 4839475 ~ 4854999 (-) True CI01000012_04839741_04854323
CI01000012_04879477_04890031.mRNA mRNA upstream 252260 4879440 ~ 4890031 (-) True CI01000012_04879477_04890031
CI01000012_04926292_04930302.mRNA mRNA upstream 298316 4925496 ~ 4930474 (-) True CI01000012_04926292_04930302
CI01000012_05022143_05030697.mRNA mRNA upstream 394563 5021743 ~ 5030697 (-) True CI01000012_05022143_05030697
TU81962 other downstream 92247 4533530 ~ 4534672 (-) True G71898
TU80715 other downstream 1760027 2866508 ~ 2866892 (-) True G70774
TU79337 other downstream 3250621 1332075 ~ 1376298 (-) True G69562
TU79336 other downstream 3294018 1332075 ~ 1332901 (-) False G69562
TU79046 other downstream 3475721 1135676 ~ 1151198 (-) True CI01000012_01139864_01192154
TU82190 other upstream 149040 4776220 ~ 4776835 (-) False G72068
TU82191 other upstream 149040 4776220 ~ 4780132 (-) True G72068
TU82349 other upstream 666593 5293773 ~ 5302206 (-) True G72204
TU82391 other upstream 736462 5363642 ~ 5364083 (-) False G72235
TU82393 other upstream 736462 5363642 ~ 5364079 (-) True G72235

Expression Profile